PDB 5Z56
ELECTRON MICROSCOPY0 chains86 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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1 domainAll Domains (86)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 1 | e5z5611 | 1:394-1304 | 109.4.1.126 | 109 → 109.4 → 109.4.1 |
| 2 | 3 | e5z5631 | 3:1133-1217 | CPSF_A | 101 → 101.1 → 101.1.1 |
| 3 | 3 | e5z5632 | 3:1-403 | MMS1_N | 5 → 5.1 → 5.1.4 |
| 4 | 3 | e5z5633 | 3:442-772 | Beta-prop_RSE1_2nd | 5 → 5.1 → 5.1.4 |
| 5 | 3 | e5z5634 | 3:404-441,3:773-1132 | CPSF_A | 5 → 5.1 → 5.1.4 |
| 6 | 4 | e5z5641 | 4:12-89 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 7 | 5 | e5z5651 | 5:12-119 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 8 | 6 | e5z5661 | 6:7-91 | PHF5 | 377 → 377.1 → 377.1.4 |
| 9 | 7 | e5z5671 | 7:15-80 | SF3b10 | 1106 → 1106.1 → 1106.1.1 |
| 10 | a | e5z56a1 | a:3-85 | LSM | 4 → 4.1 → 4.1.1 |
| 11 | A | e5z56A1 | A:1183-1502 | U6-snRNA_bdg,U5_2-snRNA_bdg | 4967 → 4967.1 → 4967.1.1 |
| 12 | A | e5z56A2 | A:1755-2015 | PRP8_domainIV | 2484 → 2484.1 → 2484.1.1 |
| 13 | A | e5z56A3 | A:25-810 | PRO8NT,PROCN | 1038 → 1038.1 → 1038.1.1 |
| 14 | A | e5z56A4 | A:811-1182 | RRM_4 | 304 → 304.48 → 304.48.1 |
| 15 | A | e5z56A5 | A:1503-1505,A:1527-1754 | U6-snRNA_bdg | 2008 → 2008.1 → 2008.1.1 |
| 16 | A | e5z56A6 | A:2067-2314 | JAB,PROCT | 2492 → 2492.1 → 2492.1.1 |
| 17 | b | e5z56b1 | b:8-89 | LSM | 4 → 4.1 → 4.1.1 |
| 18 | c | e5z56c1 | c:1-82 | LSM | 4 → 4.1 → 4.1.1 |
| 19 | C | e5z56C1 | C:829-957 | EFG_C | 304 → 304.24 → 304.24.1 |
| 20 | C | e5z56C2 | C:581-659 | EFG_III | 304 → 304.24 → 304.24.1 |
| 21 | C | e5z56C3 | C:660-828 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 22 | C | e5z56C4 | C:114-439 | GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 23 | C | e5z56C5 | C:440-580 | GTP_EFTU_D2 | 1 → 1.1 → 1.1.7 |
| 24 | d | e5z56d1 | d:20-116 | LSM | 4 → 4.1 → 4.1.1 |
| 25 | D | e5z56D1 | D:1521-1722 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 26 | D | e5z56D2 | D:683-887 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 27 | D | e5z56D3 | D:1126-1180 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 28 | D | e5z56D4 | D:2016-2125 | Sec63 | 11 → 11.1 → 11.1.1 |
| 29 | D | e5z56D5 | D:888-993 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 30 | D | e5z56D6 | D:1825-1957 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 31 | D | e5z56D7 | D:1312-1520 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 32 | D | e5z56D8 | D:404-682 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 33 | D | e5z56D9 | D:994-1125 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 34 | D | e5z56D10 | D:1723-1824 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 35 | D | e5z56D11 | D:1958-2015 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 36 | D | e5z56D12 | D:1181-1311 | Sec63 | 11 → 11.1 → 11.1.1 |
| 37 | e | e5z56e1 | e:14-92 | LSM | 4 → 4.1 → 4.1.1 |
| 38 | E | e5z56E1 | E:58-356 | WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 39 | f | e5z56f1 | f:2-75 | LSM | 4 → 4.1 → 4.1.1 |
| 40 | g | e5z56g1 | g:3-76 | LSM | 4 → 4.1 → 4.1.1 |
| 41 | h | e5z56h1 | h:4-85 | LSM | 4 → 4.1 → 4.1.1 |
| 42 | i | e5z56i1 | i:4-89 | LSM | 4 → 4.1 → 4.1.1 |
| 43 | I | e5z56I1 | I:156-819 | TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 44 | j | e5z56j1 | j:1-82 | LSM | 4 → 4.1 → 4.1.1 |
| 45 | J | e5z56J1 | J:216-802 | HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 | 109 → 109.4 → 109.4.1 |
| 46 | k | e5z56k1 | k:20-116 | LSM | 4 → 4.1 → 4.1.1 |
| 47 | l | e5z56l1 | l:14-92 | LSM | 4 → 4.1 → 4.1.1 |
| 48 | L | e5z56L1 | L:8-64 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 49 | L | e5z56L2 | L:62-110 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 50 | m | e5z56m1 | m:2-75 | LSM | 4 → 4.1 → 4.1.1 |
| 51 | M | e5z56M1 | M:191-226 | zf-CCCH | 906 → 906.1 → 906.1.1 |
| 52 | n | e5z56n1 | n:4-76 | LSM | 4 → 4.1 → 4.1.1 |
| 53 | N | e5z56N1 | N:1-143 | BUD31 | 3952 → 3952.1 → 3952.1.1 |
| 54 | o | e5z56o1 | o:2-163 | LRR_9 | 207 → 207.1 → 207.1.1 |
| 55 | O | e5z56O1 | O:90-221 | zf-CCCH_RBM22 | 906 → 906.1 → 906.1.1 |
| 56 | O | e5z56O2 | O:222-303 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 57 | O | e5z56O3 | O:19-89 | STL11_N | 376 → 376.1 → 376.1.3 |
| 58 | p | e5z56p1 | p:85-96,p:145-224 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 59 | p | e5z56p2 | p:7-84 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 60 | q | e5z56q1 | q:68-134,q:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 61 | Q | e5z56Q1 | Q:493-659 | Aquarius_N_2nd | 1 → 1.1 → 1.1.7 |
| 62 | Q | e5z56Q2 | Q:1135-1381 | AAA_12 | 2004 → 2004.1 → 2004.1.1 |
| 63 | Q | e5z56Q3 | Q:707-753,Q:774-794 | Aquarius_N_3rd | 3940 → 3940.1 → 3940.1.1 |
| 64 | Q | e5z56Q4 | Q:21-415 | Aquarius_N_1st | 109 → 109.4 → 109.4.1 |
| 65 | Q | e5z56Q5 | Q:416-492,Q:660-706,Q:795-1134 | ResIII, AAA_11 | 2004 → 2004.1 → 2004.1.1 |
| 66 | r | e5z56r1 | r:68-134,r:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 67 | s | e5z56s1 | s:68-134,s:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 68 | S | e5z56S1 | S:8-166 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 69 | t | e5z56t1 | t:68-134,t:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 70 | T | e5z56T1 | T:184-496 | WD40 | 5 → 5.1 → 5.1.4 |
| 71 | u | e5z56u1 | u:160-285 | Surp,PRP21_like_P | 574 → 574.1 → 574.1.1 |
| 72 | v | e5z56v1 | v:18-35,v:40-86 | zf-met | 386 → 386.1 → 386.1.1 |
| 73 | v | e5z56v2 | v:87-91,v:114-223 | SF3A2 | 319 → 319.2 → 319.2.1 |
| 74 | V | e5z56V1 | V:149-406 | MIF4G | 109 → 109.4 → 109.4.1 |
| 75 | V | e5z56V2 | V:448-648 | MA3 | 109 → 109.4 → 109.4.1 |
| 76 | w | e5z56w1 | w:2-353 | 130.1.1.0 | 130 → 130.1 → 130.1.1 |
| 77 | W | e5z56W1 | W:273-579 | WD40 | 5 → 5.1 → 5.1.4 |
| 78 | x | e5z56x1 | x:575-750 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 79 | x | e5z56x2 | x:386-574 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 80 | x | e5z56x3 | x:932-1017 | OB_NTP_bind | 2 → 2.1 → 2.1.1 |
| 81 | x | e5z56x4 | x:751-931 | HA2_N,HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 82 | X | e5z56X1 | X:246-367 | FHA | 73 → 73.1 → 73.1.1 |
| 83 | y | e5z56y1 | y:5-83 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 84 | y | e5z56y2 | y:138-299 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 85 | Y | e5z56Y1 | Y:8-112 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 86 | z | e5z56z1 | z:2-178 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors