ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5z4pD1 - ECOD Domain | ECOD

ECOD/Domains/e5z4pD1

e5z4pD1

UID: 002439876

PDB

Range: D:1-245
PDB: 5Z4P chain D(all domains)
UniProt: Q6B856 (all domains)
Gene: TUBB2B

Molecule: Tubulin beta-2B chain

3D Structure

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Related Domains

Browse other domains in Tubulin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin(2003.1.6.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Magnesium ionMG
metal

+ 2 additives (Glycerin, Imidazole)

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5Z4P RCSB PDB: 5Z4P PDBe: 5Z4P UniProt: Q6B856

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

ImidazoleIMD

Shown in the structure viewer. Drug annotations from DrugDomain.