ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qdvT1 - ECOD Domain | ECOD

ECOD/Domains/e6qdvT1

e6qdvT1

UID: 002448747

PDB

Range: T:19-30,T:33-749
PDB: 6QDV chain T(all domains)
UniProt: Q9HCS7 (all domains)
Gene: XAB2

Molecule: Pre-mRNA-splicing factor SYF1 (Protein HCNP) (XPA-binding protein 2)

3D Structure

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Related Domains

Browse other domains in TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N(109.4.1.1541)

Pfam Families

Tetratricopeptide repeat

ClanCL0020TPR

PF23220HAT_Syf1_M

Pre-mRNA-splicing factor SYF1 middle HAT repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

PF23233HAT_Syf1_CNRKL1_N

Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

External Links

ECOD PDB View: 6QDV RCSB PDB: 6QDV PDBe: 6QDV UniProt: Q9HCS7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TPR

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

ClanCL0020TPR