ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5qojA1 - ECOD Domain | ECOD

ECOD/Domains/e5qojA1

e5qojA1

UID: 002485422

PDB

Range: A:96-244
PDB: 5QOJ chain A(all domains)
UniProt: Q8IU60 (all domains)
Gene: DCP2

Molecule: DCP2 (NUDT20)

3D Structure

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Related Domains

Browse other domains in NUDIX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX(221.4.1.1)

Ligands

in contact, ≤ 4 Å

2-(thiophen-2-yl)-1H-imidazoleJG4

+ 4 additives (Acetate, Dimethyl sulfoxide, 1,2-ETHANEDIOL, …)

AcetateACT
DrugBank DB14511
Dimethyl sulfoxideDMS

Pfam Families

NUDIX domain

ClanCL0261NUDIX

External Links

ECOD PDB View: 5QOJ RCSB PDB: 5QOJ PDBe: 5QOJ UniProt: Q8IU60

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.