ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hwoD1 - ECOD Domain | ECOD

ECOD/Domains/e6hwoD1

e6hwoD1

UID: 002517874

PDB

Range: D:88-411
PDB: 6HWO chain D(all domains)
UniProt: Q08499 (all domains)
Gene: PDE4D

Molecule: cAMP-specific 3',5'-cyclic phosphodiesterase 4D

3D Structure

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Related Domains

Browse other domains in PDEase_I →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyPDEase_I(131.1.1.1)

Ligands

in contact, ≤ 4 Å

3-[5-[(4aR,8aS)-4-OXIDANYLIDENE-3-PROPAN-2-YL-4a,5,8,8a-TETRAHYDROPHTHALAZIN-1-YL]-2-METHOXY-PHENYL]-N-(PHENYLMETHYL)PROP-2-YNAMIDEFFZ
Magnesium ionMG
metal
Zinc ionZN

Pfam Families

PF00233PDEase_I

3'5'-cyclic nucleotide phosphodiesterase

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 6HWO RCSB PDB: 6HWO PDBe: 6HWO UniProt: Q08499

Downloads

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metal

+ 4 additives (Dimethyl sulfoxide, HEPES, 1,2-ETHANEDIOL, …)

Dimethyl sulfoxideDMS
DrugBank DB01093
HEPESEPE
DrugBank DB16872
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.