ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6qoyB1 - ECOD Domain | ECOD

ECOD/Domains/e6qoyB1

e6qoyB1

UID: 002562378

PDB

Range: B:1-199
PDB: 6QOY chain B(all domains)
UniProt: D2K8B3 (all domains)
Gene: alpA

Molecule: Lytic endopeptidase preproenzyme

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

4-(2-Aminoethyl)Benzenesulfonyl FluorideAES
drugDrugBank DB07347
Chloride ionCL
4-(2-azanylethyl)benzenesulfonic acidJAT

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 6QOY RCSB PDB: 6QOY PDBe: 6QOY UniProt: D2K8B3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 3 additives (Glycerin, Sulfate ion, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.