ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6vdkD2 - ECOD Domain | ECOD

ECOD/Domains/e6vdkD2

e6vdkD2

UID: 002576072

PDB

Range: D:2-48
PDB: 6VDK chain D(all domains)
UniProt: F2WR39 (all domains)
Gene: pol

Molecule: Gag-Pol polyprotein (Pr160Gag-Pol)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Integrase_Zn →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_Zn(101.1.1.14)

Pfam Families

PF02022Integrase_Zn

Integrase Zinc binding domain

ClanCL0123HTH

External Links

ECOD PDB View: 6VDK RCSB PDB: 6VDK PDBe: 6VDK UniProt: F2WR39

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure