ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6sxsAAA1 - ECOD Domain | ECOD

ECOD/Domains/e6sxsAAA1

e6sxsAAA1

UID: 002583845

PDB

Range: AAA:338-498
PDB: 6SXS chain AAA(all domains)
UniProt: Q8NK89 (all domains)
Gene: abfB

Molecule: Alpha-L-arabinofuranosidase B

3D Structure

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Related Domains

Browse other domains in AbfB →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-Trefoil(6)

HH-groupbeta-Trefoil(6.1)

TT-groupbeta-Trefoil(6.1.1)

FFamilyAbfB(6.1.1.8)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 5 additives (Acetate, Triethylene glycol, 1,2-ETHANEDIOL, …)

AcetateACT
DrugBank DB14511

Pfam Families

Alpha-L-arabinofuranosidase B (ABFB) domain

ClanCL0066Trefoil

External Links

ECOD PDB View: 6SXS RCSB PDB: 6SXS PDBe: 6SXS UniProt: Q8NK89

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE

DrugBank DB02327

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.