ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6ydpBc2 - ECOD Domain | ECOD

ECOD/Domains/e6ydpBc2

e6ydpBc2

UID: 002641415

PDB

Range: Bc:62-135
PDB: 6YDP chain Bc(all domains)
UniProt: F1SHP6 (all domains)
Gene: MRPL39

Molecule: Large ribosomal subunit protein mL39 (39S ribosomal protein L39, mitochondrial)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TGS →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyTGS(221.1.1.16)

Pfam Families

TGS domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 6YDP RCSB PDB: 6YDP PDBe: 6YDP UniProt: F1SHP6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure