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PDB 6YDP

ELECTRON MICROSCOPY0 chains99 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (99)

#ChainDomain IDRangeFamilyClassification
1Aae6ydpAa1Aa:88-379MRP-S223966 → 3966.1 → 3966.1.1
2Abe6ydpAb1Ab:2-136MRP-S23103 → 103.15 → 103.15.1
3ABe6ydpAB1AB:55-274Ribosomal_S22007 → 2007.6 → 2007.6.1
4Ace6ydpAc1Ac:2-170L51_S25_CI-B82485 → 2485.1 → 2485.1.1
5ACe6ydpAC1AC:36-167MRP-S24327 → 327.11 → 327.11.1
6Ade6ydpAd1Ad:27-203MRP-S263967 → 3967.1 → 3967.1.1
7Aee6ydpAe1Ae:68-455MRP-S27109 → 109.4 → 109.4.1
8AEe6ydpAE1AE:287-430Ribosomal_S5_C212 → 212.1 → 212.1.1
9AEe6ydpAE2AE:216-286Ribosomal_S5330 → 330.1 → 330.1.1
10AEe6ydpAE3AE:88-215Ribosomal_uS5m_N3274 → 3274.1 → 3274.1.1
11Afe6ydpAf1Af:78-176MRP-S352 → 2.1 → 2.1.1
12AFe6ydpAF1AF:2-123Ribosomal_S6304 → 304.12 → 304.12.1
13Age6ydpAg1Ag:45-345DAP32004 → 2004.1 → 2004.1.1
14Age6ydpAg2Ag:346-397DAP3148 → 148.1 → 148.1.3
15AGe6ydpAG1AG:35-242Ribosomal_S7167 → 167.1 → 167.1.1
16Ahe6ydpAh1Ah:268-387MRP-S313968 → 3968.1 → 3968.1.1
17Aie6ydpAi1Ai:4-102MRP-S333969 → 3969.1 → 3969.1.1
18AIe6ydpAI1AI:70-397Ribosomal_S9212 → 212.1 → 212.1.1
19Aje6ydpAj1Aj:1-213MRP-S344 → 4.27 → 4.27.1
20AJe6ydpAJ1AJ:50-189Ribosomal_S10304 → 304.44 → 304.44.1
21Ake6ydpAk1Ak:51-325MRP-S28330 → 330.3 → 330.3.1
22AKe6ydpAK1AK:60-196Ribosomal_S112484 → 2484.1 → 2484.1.1
23ALe6ydpAL1AL:31-139Ribosom_S12_S232 → 2.1 → 2.1.1
24Ame6ydpAm1Am:2-117CHCH568 → 568.1 → 568.1.1
25Ane6ydpAn1An:128-199COX24_C3970 → 3970.1 → 3970.1.1
26ANe6ydpAN1AN:28-128Ribosomal_S14377 → 377.1 → 377.1.1
27Aoe6ydpAo01162-380PPR_3, Rib_mS39_PPR109 → 109.4 → 109.4.1
28Aoe6ydpAo02371-641109.4.1.0109 → 109.4 → 109.4.1
29AOe6ydpAO1AO:65-239Ribosomal_S15616 → 616.1 → 616.1.1
30Ape6ydpAp1Ap:49-238Ribosomal_S18101 → 101.1 → 101.1.1
31APe6ydpAP1AP:10-126Ribosomal_S16837 → 837.1 → 837.1.1
32AQe6ydpAQ1AQ:2-113Ribosomal_S172 → 2.1 → 2.1.1
33ARe6ydpAR1AR:47-143Ribosomal_S18101 → 101.1 → 101.1.1
34AUe6ydpAU1AU:2-87Ribosomal_S213666 → 3666.1 → 3666.1.1
35B0e6ydpB01B0:39-148Ribosomal_L27325 → 325.1 → 325.1.8
36B1e6ydpB11B1:2-245Ribosomal_L284232 → 4232.1 → 4232.1.2
37B2e6ydpB21B2:65-243MRP-L47192 → 192.4 → 192.4.1
38B3e6ydpB31B3:35-152Ribosomal_L30887 → 887.1 → 887.1.1
39B4e6ydpB41B4:35-96Mitoc_L554987 → 4987.1 → 4987.1.1
40B5e6ydpB51B5:79-188Ribosomal_L32p375 → 375.1 → 375.1.1
41B6e6ydpB61B6:13-64Ribosomal_L33375 → 375.1 → 375.1.1
42B7e6ydpB71B7:50-95Ribosomal_L343074 → 3074.1 → 3074.1.1
43B8e6ydpB81B8:94-188Ribosomal_L35p4281 → 4281.1 → 4281.1.1
44B9e6ydpB91B9:63-100Ribosomal_L36919 → 919.1 → 919.1.1
45Bae6ydpBa1Ba:30-422PDCD92008 → 2008.1 → 2008.1.1
46Bbe6ydpBb1Bb:27-380PBP11 → 11.1 → 11.1.7
47Bce6ydpBc1Bc:30-61,Bc:136-324309.1.2.0309 → 309.1 → 309.1.2
48Bce6ydpBc2Bc:62-135TGS221 → 221.1 → 221.1.1
49BCe6ydpBC1BC:320-445GTP_EFTU_D21 → 1.1 → 1.1.7
50BCe6ydpBC2BC:644-742EFG_C304 → 304.24 → 304.24.1
51BCe6ydpBC3BC:446-524EFG_III304 → 304.24 → 304.24.1
52BCe6ydpBC4BC:40-321GTP_EFTU2004 → 2004.1 → 2004.1.1
53BCe6ydpBC5BC:525-643EFG_IV212 → 212.1 → 212.1.1
54Bde6ydpBd1Bd:39-156MRP-L283864 → 3864.1 → 3864.1.1
55BDe6ydpBD1BD:61-179Ribosomal_L22 → 2.1 → 2.1.1
56BDe6ydpBD2BD:180-300Ribosomal_L2_C4 → 4.1 → 4.1.1
57Bee6ydpBe1Be:14-135MRP-L273865 → 3865.1 → 3865.1.1
58BEe6ydpBE1BE:42-348Ribosomal_L31 → 1.1 → 1.1.7
59Bfe6ydpBf1Bf:35-142MRP-S323905 → 3905.1 → 3905.1.1
60BFe6ydpBF1BF:45-273Ribosomal_L47559 → 7559.1 → 7559.1.1
61Bge6ydpBg1Bg:2-149L51_S25_CI-B82485 → 2485.1 → 2485.1.1
62Bhe6ydpBh1Bh:31-234RM44_endonuclase171 → 171.1 → 171.1.1
63Bhe6ydpBh2Bh:235-319DSRM_MRPL44330 → 330.1 → 330.1.1
64Bie6ydpBi1Bi:38-297Tim44243 → 243.1 → 243.1.1
65BIe6ydpBI1BI:53-150Ribosomal_L9_N+bL9m_N4076 → 4076.1 → 4076.1.1
66Bje6ydpBj1Bj:43-279MRP-L46221 → 221.4 → 221.4.1
67BJe6ydpBJ1BJ:29-196Ribosomal_L10304 → 304.60 → 304.60.1
68Bke6ydpBk1Bk:48-212Ribosomal_S10304 → 304.44 → 304.44.1
69BKe6ydpBK1BK:83-192Ribosomal_L11101 → 101.1 → 101.1.16
70BKe6ydpBK2BK:17-83Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
71Ble6ydpBl1Bl:34-166Img2306 → 306.3 → 306.3.1
72Bme6ydpBm1Bm:51-159Ribosomal_L50132 → 132.1 → 132.1.1
73Bne6ydpBn1Bn:32-128MRP-L51192 → 192.26 → 192.26.1
74BNe6ydpBN1BN:2-178Ribosomal_L132490 → 2490.2 → 2490.2.1
75Boe6ydpBo1Bo:23-119MRPL523906 → 3906.1 → 3906.1.1
76BOe6ydpBO1BO:31-145Ribosomal_L143174 → 3174.1 → 3174.1.1
77Bpe6ydpBp1Bp:2-98MRP_L532485 → 2485.1 → 2485.1.1
78BPe6ydpBP1BP:9-296Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
79BQe6ydpBQ1BQ:30-251Ribosomal_L16325 → 325.1 → 325.1.5
80BRe6ydpBR1BR:9-161Ribosomal_L17218 → 218.3 → 218.3.1
81BSe6ydpBS1BS:38-180Ribosomal_L18p2484 → 2484.1 → 2484.1.1
82Bte6ydpBt1Bt:9-102MRP-633907 → 3907.1 → 3907.1.1
83BTe6ydpBT1BT:53-292Ribosomal_L194 → 4.1 → 4.1.1
84Bue6ydpBu1Bu:38-195RF-1330 → 330.3 → 330.3.1
85BUe6ydpBU1BU:10-149Ribosomal_L20143 → 143.2 → 143.2.1
86Bve6ydpBv1Bv:25-159CR6_interact3866 → 3866.1 → 3866.1.1
87BVe6ydpBV1BV:55-209Ribosomal_L21p4186 → 4186.1 → 4186.1.1
88Bwe6ydpBw1Bw:40-426PDCD92008 → 2008.1 → 2008.1.1
89BWe6ydpBW1BW:45-210Ribosomal_L22218 → 218.2 → 218.2.1
90Bxe6ydpBx1Bx:35-196Ribosomal_S18101 → 101.1 → 101.1.1
91BXe6ydpBX1BX:2-150Ribosomal_L23304 → 304.109 → 304.109.1
92BYe6ydpBY1BY:11-216KOW,ribosomal_L244 → 4.1 → 4.1.1
93CLe6ydpCL1CL:46-90Ribosomal_L12_N156 → 156.1 → 156.1.1
94DLe6ydpDL1DL:64-90Ribosomal_L12_N156 → 156.1 → 156.1.1
95ELe6ydpEL1EL:64-91Ribosomal_L12_N156 → 156.1 → 156.1.1
96FLe6ydpFL1FL:64-90Ribosomal_L12_N156 → 156.1 → 156.1.1
97GLe6ydpGL1GL:64-90Ribosomal_L12_N156 → 156.1 → 156.1.1
98HLe6ydpHL1HL:64-89Ribosomal_L12_N156 → 156.1 → 156.1.1
99LLe6ydpLL1LL:129-198Ribosomal_L12308 → 308.1 → 308.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors