ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6wj6B2 - ECOD Domain | ECOD

ECOD/Domains/e6wj6B2

e6wj6B2

UID: 002655611

PDB

Range: B:2-328,B:445-479
PDB: 6WJ6 chain B(all domains)
UniProt: P05429 (all domains)
Gene: psbB

Molecule: Photosystem II CP47 reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 6WJ6 RCSB PDB: 6WJ6 PDBe: 6WJ6 UniProt: P05429

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03426

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG

drugDrugBank DB02043

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.