ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ya5A1 - ECOD Domain | ECOD

ECOD/Domains/e6ya5A1

e6ya5A1

UID: 002663830

PDB

Range: A:-1-196
PDB: 6YA5 chain A(all domains)
UniProt: C3W5X6 (all domains)
Gene: PA

Molecule: Polymerase acidic protein,Polymerase acidic protein

3D Structure

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Related Domains

Browse other domains in Flu_PA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyFlu_PA(2008.1.1.1)

Ligands

in contact, ≤ 4 Å

LuteolinLU2
drugDrugBank DB15584
Magnesium ionMG
metal
MANGANESE (II) ION

Pfam Families

Influenza RNA-dependent RNA polymerase subunit PA

ClanCL0236PDDEXK

External Links

ECOD PDB View: 6YA5 RCSB PDB: 6YA5 PDBe: 6YA5 UniProt: C3W5X6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 4 additives (Dimethyl sulfoxide, Triethylene glycol, Sulfate ion, …)

Dimethyl sulfoxideDMS
DrugBank DB01093
Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.