ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6vjsY3 - ECOD Domain | ECOD

ECOD/Domains/e6vjsY3

e6vjsY3

UID: 002672367

PDB

Range: Y:95-167,Y:208-447
PDB: 6VJS chain Y(all domains)
UniProt: P00579 (all domains)
Gene: rpoD

Molecule: RNA polymerase sigma factor RpoD (Sigma-70)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Sigma70_r1_2,Sigma70_r2,Sigma70_ner →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSigma2 domain-like(142)

HH-groupSigma2 domain of RNA polymerase sigma factors(142.1)

TT-groupSigma2 domain of RNA polymerase sigma factors(142.1.1)

FFamilySigma70_r1_2,Sigma70_r2,Sigma70_ner(142.1.1.2)

Pfam Families

PF00140Sigma70_r1_2

Sigma-70 factor, region 1.2

PF04542Sigma70_r2

Sigma-70 region 2

ClanCL0123HTH

PF04546Sigma70_ner

Sigma-70, non-essential region

ClanCL0123HTH

External Links

ECOD PDB View: 6VJS RCSB PDB: 6VJS PDBe: 6VJS UniProt: P00579

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure