ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7c52M1 - ECOD Domain | ECOD

ECOD/Domains/e7c52M1

e7c52M1

UID: 002721457

PDB

Range: M:2-319
PDB: 7C52 chain M(all domains)
UniProt: A8ASG6 (all domains)
Gene: pufM

Molecule: Photosynthetic reaction center M subunit

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 7C52 RCSB PDB: 7C52 PDBe: 7C52 UniProt: A8ASG6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine

drugDrugBank DB01728

Bacteriopheophytin aBPH

Calcium ionCA

metal

SpirilloxanthinCRT

FE (III) IONFE

metal

MENAQUINONE 8MQ8

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

Ubiquinone-8UQ8

+ 2 additives (Sulfate ion, Dodecyl-beta-d-maltoside)

Sulfate ionSO4
DrugBank DB14546
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.