ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ly3A1 - ECOD Domain | ECOD

ECOD/Domains/e7ly3A1

e7ly3A1

UID: 002732561

PDB

Range: A:12-305
PDB: 7LY3 chain A(all domains)
UniProt: P0DTC2 (all domains)
Gene: S

Molecule: Spike protein S1

3D Structure

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Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Unknown atom or ionUNX

+ 1 additive (Xylitol)

Xylitol

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 7LY3 RCSB PDB: 7LY3 PDBe: 7LY3 UniProt: P0DTC2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB11195

Shown in the structure viewer. Drug annotations from DrugDomain.