ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ltkA1 - ECOD Domain | ECOD

ECOD/Domains/e7ltkA1

e7ltkA1

UID: 002758298

PDB

Range: A:8-374
PDB: 7LTK chain A(all domains)

Molecule: Histone deacetylase 2

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
N-{(1S)-1-[5-(2-methoxyquinolin-3-yl)-1H-imidazol-2-yl]pentyl}-1-methylazetidine-3-carboxamideYEM
Zinc ionZN

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 7LTK RCSB PDB: 7LTK PDBe: 7LTK

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Acetate, DI(HYDROXYETHYL)ETHER)

AcetateACT
DrugBank DB14511
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.