ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7mi2A2 - ECOD Domain | ECOD

ECOD/Domains/e7mi2A2

e7mi2A2

UID: 002770112

PDB

Range: A:388-405,A:477-531
PDB: 7MI2 chain A(all domains)

Molecule: Rpb7-binding protein seb1

3D Structure

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Related Domains

Browse other domains in Nrd1-Seb1_dom2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupSeb1 domain 2(1157)

HH-groupSeb1 domain 2(1157.1)

TT-groupSeb1 domain 2(1157.1.1)

FFamilyNrd1-Seb1_dom2(1157.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21380Nrd1-Seb1_dom2

Nrd1/Seb1, domain 2

External Links

ECOD PDB View: 7MI2 RCSB PDB: 7MI2 PDBe: 7MI2

Downloads

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