ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7kmcB1 - ECOD Domain | ECOD

ECOD/Domains/e7kmcB1

e7kmcB1

UID: 002796538

PDB

Range: B:2-200
PDB: 7KMC chain B(all domains)

Molecule: Tryptophan synthase beta chain

3D Structure

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Related Domains

Browse other domains in PALP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4)

TT-groupTryptophan synthase beta subunit-like PLP-dependent enzymes(2003.4.1)

FFamilyPALP(2003.4.1.1)

Ligands

in contact, ≤ 4 Å

Pyridoxal phosphatePLP
drugDrugBank DB00114
Chloride ionCL
Cesium ionCS
metal

+ 3 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Pfam Families

Pyridoxal-phosphate dependent enzyme

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 7KMC RCSB PDB: 7KMC PDBe: 7KMC

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.