ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ps2G1 - ECOD Domain | ECOD

ECOD/Domains/e7ps2G1

e7ps2G1

UID: 002803528

PDB

Range: G:329-525
PDB: 7PS2 chain G(all domains)

Molecule: Spike protein S1

3D Structure

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Related Domains

Browse other domains in bCoV_S1_RBD →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupBeta-coronavirus spike protein receptor-binding domain(4169.1.1)

FFamilybCoV_S1_RBD(4169.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
DI(HYDROXYETHYL)ETHER

Pfam Families

PF09408bCoV_S1_RBD

Betacoronavirus spike glycoprotein S1, receptor binding

External Links

ECOD PDB View: 7PS2 RCSB PDB: 7PS2 PDBe: 7PS2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.