ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7nmdB1 - ECOD Domain | ECOD

ECOD/Domains/e7nmdB1

e7nmdB1

UID: 002880430

PDB

Range: B:0-99
PDB: 7NMD chain B(all domains)

Molecule: Human MHC Class I, beta 2 microglobulin

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Sulfate ion, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 7NMD RCSB PDB: 7NMD PDBe: 7NMD

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.