ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8agxN1 - ECOD Domain | ECOD

ECOD/Domains/e8agxN1

e8agxN1

UID: 002980955

PDB

Range: N:2-149
PDB: 8AGX chain N(all domains)

Molecule: 60S ribosomal protein L28

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ribosomal_L27A →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal proteins L15p and L18e(2490.3)

TT-groupRibosomal proteins L15p and L18e(2490.3.1)

FFamilyRibosomal_L27A(2490.3.1.1)

Ligands

in contact, ≤ 4 Å

SpermidineSPD
drugDrugBank DB03566

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00828Ribosomal_L27A

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

ClanCL0588Ribos_L15p_L18e

External Links

ECOD PDB View: 8AGX RCSB PDB: 8AGX PDBe: 8AGX

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure