ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2heiB1 - ECOD Domain | ECOD

ECOD/Domains/e2heiB1

e2heiB1

UID: 000302449

PDB

Range: B:17-183
PDB: 2HEI chain B(all domains)
UniProt: P61020 (all domains)
Gene: RAB5B

Molecule: Ras-related protein Rab-5B

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

(4S,5S)-1,2-dithiane-4,5-diolD1D
drugDrugBank DB02693
Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315

Shown in the structure viewer.

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2HEI RCSB PDB: 2HEI PDBe: 2HEI UniProt: P61020

Downloads

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Drug annotations from DrugDomain.