ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8f4fC1 - ECOD Domain | ECOD

ECOD/Domains/e8f4fC1

e8f4fC1

UID: 003029148

PDB

Range: C:32-473
PDB: 8F4F chain C(all domains)

Molecule: Photosystem II CP43 reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 8F4F RCSB PDB: 8F4F PDBe: 8F4F

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03426

Stearic acidSTE

drugDrugBank DB03193

Ferroheme CHEC

drugDrugBank DB03317within 5 Å only

Chloride ionCL

1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

CA-MN4-O6 CLUSTEROEY

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Shown in the structure viewer. Drug annotations from DrugDomain.