ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8b5eA1 - ECOD Domain | ECOD

ECOD/Domains/e8b5eA1

e8b5eA1

UID: 003063131

PDB

Range: A:27-114,A:211-251
PDB: 8B5E chain A(all domains)

Molecule: ABC transporter permease subunit

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

ArginineARG
drugDrugBank DB00125
Sodium ionNA
metal

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer.

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 8B5E RCSB PDB: 8B5E PDBe: 8B5E

Downloads

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Drug annotations from DrugDomain.