ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ahvD1 - ECOD Domain | ECOD

ECOD/Domains/e8ahvD1

e8ahvD1

UID: 003067221

PDB

Range: D:1-220
PDB: 8AHV chain D(all domains)

Molecule: Cathepsin L

3D Structure

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Related Domains

Browse other domains in Peptidase_C1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyPeptidase_C1(219.1.1.1)

Ligands

in contact, ≤ 4 Å

(phenylmethyl) ~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S},3~{S})-2-oxidanyl-1-oxidanylidene-1-(pyridin-2-ylmethylamino)hexan-3-yl]amino]pentan-2-yl]carbamateM6L

+ 3 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

PF00112Peptidase_C1

Papain family cysteine protease

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 8AHV RCSB PDB: 8AHV PDBe: 8AHV

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.