ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8gkpC1 - ECOD Domain | ECOD

ECOD/Domains/e8gkpC1

e8gkpC1

UID: 003085704

PDB

Range: C:122-403
PDB: 8GKP chain C(all domains)

Molecule: Alkaline protease 1

3D Structure

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Related Domains

Browse other domains in Peptidase_S8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupSubtilisin-like(2499)

HH-groupSubtilisin-like(2499.1)

TT-groupSubtilisin-like(2499.1.1)

FFamilyPeptidase_S8(2499.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
phenylmethylsulfonyl fluoridePMF

+ 2 additives (Formic acid, DI(HYDROXYETHYL)ETHER)

Formic acidFMT

Pfam Families

PF00082Peptidase_S8

Subtilase family

External Links

ECOD PDB View: 8GKP RCSB PDB: 8GKP PDBe: 8GKP

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01942

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.