ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ssaC3 - ECOD Domain | ECOD

ECOD/Domains/e8ssaC3

e8ssaC3

UID: 003105330

PDB

Range: C:512-543,C:569-826
PDB: 8SSA chain C(all domains)

Molecule: Glutamate receptor 2, Voltage-dependent calcium channel gamma-5 subunit chimera

3D Structure

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Related Domains

Browse other domains in Lig_chan →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyLig_chan(5054.1.1.1)

Ligands

in contact, ≤ 4 Å

Glutamic acidGLU
drugDrugBank DB00142
(Z,Z)-4-Hydroxy-N,N,N-Trimethyl-10-Oxo-7-[(1-Oxo-9-Octadecenyl)Oxy]-3,5,9-Trioxa-4-Phosphaheptacos-18-En-1-Aminium-4-OxidePCW
drug

Pfam Families

PF00060Lig_chan

Ligand-gated ion channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 8SSA RCSB PDB: 8SSA PDBe: 8SSA

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03690

SpermidineSPD

drugDrugBank DB03566

Shown in the structure viewer. Drug annotations from DrugDomain.