ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P33753_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/P33753_F1_nD3

P33753_F1_nD3

UID: 003172671

AlphaFold

Range: 236-639
AlphaFold: AF-P33753
UniProt: P33753 (all domains)
Gene: TRM2

Protein: tRNA (uracil(54)-C(5))-methyltransferase (EC 2.1.1.35) (Rho-associated nuclease 1) (Transfer RNA methyltransferase 2) (tRNA(m5U54)-methyltransferase)

3D Structure

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Related Domains

Browse other domains in tRNA_U5-meth_tr, Methyltransf_31 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilytRNA_U5-meth_tr, Methyltransf_31(2003.1.5.156)

Pfam Families

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

PF13847Methyltransf_31

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: P33753 UniProt: P33753

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 236-639