ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q7Z3B4_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q7Z3B4_F1_nD2

Q7Z3B4_F1_nD2

UID: 003550318

AlphaFold

Range: 186-295
AlphaFold: AF-Q7Z3B4
UniProt: Q7Z3B4 (all domains)
Gene: NUP54

Protein: Nucleoporin p54 (54 kDa nucleoporin)

3D Structure

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Related Domains

Browse other domains in Nup54_a-b →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupNup54 ferredoxin-like domain(304.166)

TT-groupNup54 ferredoxin-like domain(304.166.1)

FFamilyNup54_a-b(304.166.1.9)

Pfam Families

PF29949Nup54_a-b

Nup54 alpha/beta domain

ClanCL0960HD_NOTCH-like

External Links

AlphaFold DB: Q7Z3B4 UniProt: Q7Z3B4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 186-295