ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A1D8PNM2_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A1D8PNM2_F1_nD1

A0A1D8PNM2_F1_nD1

UID: 003788136

AlphaFold

Range: 791-1205
AlphaFold: AF-A0A1D8PNM2
UniProt: A0A1D8PNM2 (all domains)
Gene: CAALFM_C503140CA

Protein: Protein transport protein sec16

3D Structure

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Related Domains

Browse other domains in Sec16_C,Sec16 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupNucleoporin NUP85/Nucleoporin NUP145 C-terminal domain(109.21)

TT-groupNucleoporin NUP85/Nucleoporin NUP145 C-terminal domain(109.21.1)

FFamilySec16_C,Sec16(109.21.1.4)

Pfam Families

PF12931TPR_Sec16

Sec16 Sec23-binding domain

ClanCL0020TPR

Vesicle coat trafficking protein Sec16 mid-region

External Links

AlphaFold DB: A0A1D8PNM2 UniProt: A0A1D8PNM2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 791-1205