ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q8VYV0_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8VYV0_F1_nD1

Q8VYV0_F1_nD1

UID: 003807842

AlphaFold

Range: 106-170,202-230,261-410,496-505,576-599
AlphaFold: AF-Q8VYV0
UniProt: Q8VYV0 (all domains)
Gene: At1g43690

Protein: At1g43690/F2J6_4 (Ubiquitin interaction motif-containing protein)

3D Structure

Loading viewer...

Related Domains

Browse other domains in MINDY-3_4_CD →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyMINDY-3_4_CD(219.1.1.81)

Pfam Families

PF13898MINDY-3_4_CD

Deubiquitinating enzyme MINDY-3/4, conserved domain

External Links

AlphaFold DB: Q8VYV0 UniProt: Q8VYV0

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 106-170,202-230,261-410,496-505,576-599