ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9FGK8_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q9FGK8_F1_nD3

Q9FGK8_F1_nD3

UID: 003834075

AlphaFold

Range: 511-950
AlphaFold: AF-Q9FGK8
UniProt: Q9FGK8 (all domains)
Gene: SEC16B

Protein: Protein transport protein SEC16B homolog (Protein MAIGO 5 homolog)

3D Structure

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Related Domains

Browse other domains in Sec16_C,Sec16 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupNucleoporin NUP85/Nucleoporin NUP145 C-terminal domain(109.21)

TT-groupNucleoporin NUP85/Nucleoporin NUP145 C-terminal domain(109.21.1)

FFamilySec16_C,Sec16(109.21.1.4)

Pfam Families

PF12931TPR_Sec16

Sec16 Sec23-binding domain

ClanCL0020TPR

Vesicle coat trafficking protein Sec16 mid-region

External Links

AlphaFold DB: Q9FGK8 UniProt: Q9FGK8

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 511-950