ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A4QP75_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A4QP75_F1_nD1

A4QP75_F1_nD1

UID: 003899941

AlphaFold

Range: 56-480
AlphaFold: AF-A4QP75
UniProt: A4QP75 (all domains)
Gene: trmt2b

Protein: tRNA (uracil-5-)-methyltransferase homolog B (EC 2.1.1.35) (TRM2 homolog B) (rRNA (uracil-5-)-methyltransferase TRMT2B) (EC 2.1.1.-)

3D Structure

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Related Domains

Browse other domains in tRNA_U5-meth_tr, Methyltransf_31 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilytRNA_U5-meth_tr, Methyltransf_31(2003.1.5.156)

Pfam Families

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

PF13847Methyltransf_31

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: A4QP75 UniProt: A4QP75

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 56-480