ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m8sA2 - ECOD Domain | ECOD

ECOD/Domains/e3m8sA2

e3m8sA2

UID: 000394838

PDB

Range: A:423-591
PDB: 3M8S chain A(all domains)
UniProt: P19821 (all domains)
Gene: polA

Molecule: DNA polymerase I, thermostable

3D Structure

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Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturealpha bundles(a.7)

XX-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970)

HH-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1)

TT-group"fingers" domain in bacteriophage RB69-like DNA polymerase I(4970.1.1)

FFamilyDNA_pol_A(4970.1.1.2)

Ligands

in contact, ≤ 4 Å

POLYETHYLENE GLYCOL (N=34)15P
4'-methylthymidine 5'-(tetrahydrogen triphosphate)HXB

+ 2 additives (Acetate, DI(HYDROXYETHYL)ETHER)

AcetateACT

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 3M8S RCSB PDB: 3M8S PDBe: 3M8S UniProt: P19821

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.