ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o0oB1 - ECOD Domain | ECOD

ECOD/Domains/e3o0oB1

e3o0oB1

UID: 000396665

PDB

Range: B:130-633
PDB: 3O0O chain B(all domains)
UniProt: O33839 (all domains)
Gene: nrdJ

Molecule: Ribonucleoside-diphosphate reductase

3D Structure

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Related Domains

Browse other domains in Ribonuc_red_lgC →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTen stranded beta/alpha barrel(2500)

HH-groupTen stranded beta/alpha barrel(2500.1)

TT-groupTen stranded beta/alpha barrel(2500.1.1)

FFamilyRibonuc_red_lgC(2500.1.1.2)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Thymidine 5'-triphosphateTTP
drugDrugBank DB02452

Pfam Families

PF02867Ribonuc_red_lgC

Ribonucleotide reductase, barrel domain

ClanCL0339PFL-like

External Links

ECOD PDB View: 3O0O RCSB PDB: 3O0O PDBe: 3O0O UniProt: O33839

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

5'-DEOXYADENOSINE

CobalaminB12

Magnesium ionMG

metal

Shown in the structure viewer. Drug annotations from DrugDomain.