ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A1VQF1_nD2 - ECOD Domain | ECOD

ECOD/Domains/A1VQF1_nD2

A1VQF1_nD2

UID: 004132035

AlphaFold

Range: 86-490
AlphaFold: AF-A1VQF1
UniProt: A1VQF1 (all domains)
Gene: rlmD

Protein: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) (23S rRNA(m5U1939)-methyltransferase)

3D Structure

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Related Domains

Browse other domains in tRNA_U5-meth_tr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilytRNA_U5-meth_tr(2003.1.5.53)

Pfam Families

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: A1VQF1 UniProt: A1VQF1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 86-490