ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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U2UMQ6_nD4 - ECOD Domain | ECOD

ECOD/Domains/U2UMQ6_nD4

U2UMQ6_nD4

UID: 004504230

AlphaFold

Range: 596-720
AlphaFold: AF-U2UMQ6
UniProt: U2UMQ6 (all domains)
Gene: cas12a

Protein: CRISPR-associated endonuclease Cas12a (EC 3.1.21.1) (EC 4.6.1.22) (AsCpf1) (CRISPR-associated endonuclease Cpf1)

3D Structure

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Related Domains

Browse other domains in Cpf1_PI-like →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain(1069)

HH-groupCRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain(1069.1)

TT-groupCRISPR-associated endonuclease Cpf1 PI (PAM-interacting) domain(1069.1.1)

FFamilyCpf1_PI-like(1069.1.1.1)

Pfam Families

PF22222Cpf1_PI-like

CRISPR-associated endonuclease Cpf1 PI domain

External Links

AlphaFold DB: U2UMQ6 UniProt: U2UMQ6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 596-720