ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5y88t1 - ECOD Domain | ECOD

ECOD/Domains/e5y88t1

e5y88t1

UID: 005093530

PDB

Range: t:1-61
PDB: 5Y88 chain t(all domains)
UniProt: P32523 (all domains)
Gene: PRP19

Molecule: Pre-mRNA-processing factor 19 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase PRP19)

3D Structure

Loading viewer...

Related Domains

Browse other domains in U-box →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyU-box(376.1.1.8)

Pfam Families

U-box domain

ClanCL0229RING

External Links

ECOD PDB View: 5Y88 RCSB PDB: 5Y88 PDBe: 5Y88 UniProt: P32523

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure