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PDB 5Y88

ELECTRON MICROSCOPY0 chains50 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (50)

#ChainDomain IDRangeFamilyClassification
1ae5y88a1a:4-55,a:75-102LSM4 → 4.1 → 4.1.1
2Ae5y88A1A:1575-1576,A:1603-1828U6-snRNA_bdg2008 → 2008.1 → 2008.1.1
3Ae5y88A2A:885-1255RRM_4304 → 304.48 → 304.48.1
4Ae5y88A3A:1256-1574U6-snRNA_bdg,U5_2-snRNA_bdg4967 → 4967.1 → 4967.1.1
5Ae5y88A4A:127-884PRO8NT,PROCN1038 → 1038.1 → 1038.1.1
6Ae5y88A5A:1829-2085PRP8_domainIV2484 → 2484.1 → 2484.1.1
7be5y88b1b:10-92LSM4 → 4.1 → 4.1.1
8ce5y88c1c:12-83LSM4 → 4.1 → 4.1.1
9Ce5y88C1C:102-439GTP_EFTU2004 → 2004.1 → 2004.1.1
10Ce5y88C2C:440-510,C:530-5891.1.7.01 → 1.1 → 1.1.7
11Ce5y88C3C:859-975EFG_C304 → 304.24 → 304.24.1
12Ce5y88C4C:590-674304.24.1.0304 → 304.24 → 304.24.1
13Ce5y88C5C:675-858EFG_IV212 → 212.1 → 212.1.1
14de5y88d1d:2-76LSM4 → 4.1 → 4.1.1
15ee5y88e1e:4-85LSM4 → 4.1 → 4.1.1
16fe5y88f1f:1-48,f:76-109LSM4 → 4.1 → 4.1.1
17ge5y88g1g:15-108LSM4 → 4.1 → 4.1.1
18he5y88h1h:6-53,h:77-102LSM4 → 4.1 → 4.1.1
19He5y88H1H:106-819HAT_Syf1_M, HAT_Syf1_CNRKL1_C109 → 109.4 → 109.4.1
20ie5y88i1i:10-92LSM4 → 4.1 → 4.1.1
21Ie5y88I1I:36-275,I:295-564,I:589-641HAT, HAT_Syf1_CNRKL1_N109 → 109.4 → 109.4.1
22je5y88j1j:12-83LSM4 → 4.1 → 4.1.1
23Je5y88J1J:13-58Myb_DNA-binding101 → 101.1 → 101.1.1
24Je5y88J2J:62-109,J:230-252Myb_DNA-binding101 → 101.1 → 101.1.1
25ke5y88k1k:2-76LSM4 → 4.1 → 4.1.1
26le5y88l1l:4-85LSM4 → 4.1 → 4.1.1
27Le5y88L1L:1-157BUD313952 → 3952.1 → 3952.1.1
28me5y88m1m:1-48,m:76-109LSM4 → 4.1 → 4.1.1
29Me5y88M1M:214-288304.9.1.0304 → 304.9 → 304.9.1
30Me5y88M2M:3-126,M:210-213STL11_N376 → 376.1 → 376.1.3
31ne5y88n1n:44-108LSM4 → 4.1 → 4.1.1
32Ne5y88N1N:130-227RRM_1304 → 304.9 → 304.9.1
33Ne5y88N2N:1-129Torus906 → 906.1 → 906.1.1
34oe5y88o1o:1-162LRR_9207 → 207.1 → 207.1.1
35Oe5y88O1O:111-447WD40, Beta-prop_NOL10_N5 → 5.1 → 5.1.4
36pe5y88p1p:29-111RRM_5304 → 304.9 → 304.9.1
37qe5y88q1q:1-61U-box376 → 376.1 → 376.1.1
38qe5y88q2q:144-4935.1.5.05 → 5.1 → 5.1.5
39re5y88r1r:1-61U-box376 → 376.1 → 376.1.1
40re5y88r2r:144-4935.1.5.05 → 5.1 → 5.1.5
41se5y88s1s:1-61U-box376 → 376.1 → 376.1.1
42se5y88s2s:144-4935.1.5.05 → 5.1 → 5.1.5
43Se5y88S1S:151-455WD405 → 5.1 → 5.1.4
44te5y88t1t:1-61U-box376 → 376.1 → 376.1.1
45te5y88t2t:144-4935.1.5.05 → 5.1 → 5.1.5
46We5y88W1W:658-755OB_NTP_bind2 → 2.1 → 2.1.1
47We5y88W2W:271-452Helicase_C2004 → 2004.1 → 2004.1.1
48We5y88W3W:523-657HA2_C4156 → 4156.1 → 4156.1.1
49We5y88W4W:453-522HA2_N101 → 101.1 → 101.1.2
50We5y88W5W:41-270DEAD2004 → 2004.1 → 2004.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors