ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9fmdI1 - ECOD Domain | ECOD

ECOD/Domains/e9fmdI1

e9fmdI1

UID: 005282488

PDB

Range: I:33-738
PDB: 9FMD chain I(all domains)
UniProt: Q9HCS7 (all domains)
Gene: XAB2

Molecule: Pre-mRNA-splicing factor SYF1 (Protein HCNP) (XPA-binding protein 2)

3D Structure

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Related Domains

Browse other domains in TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N(109.4.1.1541)

Pfam Families

Tetratricopeptide repeat

ClanCL0020TPR

PF23220HAT_Syf1_M

Pre-mRNA-splicing factor SYF1 middle HAT repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

PF23233HAT_Syf1_CNRKL1_N

Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat

External Links

ECOD PDB View: 9FMD RCSB PDB: 9FMD PDBe: 9FMD UniProt: Q9HCS7

Downloads

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TPR

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

ClanCL0020TPR