PDB 9FMD
0 chains79 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 7view chain
2 domainsChain 8view chain
1 domainChain 9view chain
1 domainChain aview chain
1 domainChain Aview chain
6 domainsChain bview chain
1 domainChain Bview chain
12 domainsChain cview chain
1 domainChain Cview chain
5 domainsChain dview chain
1 domainChain Dview chain
1 domainChain eview chain
1 domainChain Eview chain
1 domainChain fview chain
1 domainChain gview chain
1 domainChain hview chain
1 domainChain Hview chain
2 domainsChain iview chain
1 domainChain Iview chain
1 domainChain jview chain
1 domainChain Jview chain
1 domainChain kview chain
1 domainChain lview chain
1 domainChain Lview chain
2 domainsChain mview chain
1 domainChain nview chain
1 domainChain Nview chain
1 domainChain oview chain
1 domainChain Oview chain
3 domainsChain pview chain
1 domainChain qview chain
1 domainChain Qview chain
5 domainsChain rview chain
1 domainChain sview chain
1 domainChain Sview chain
1 domainChain tview chain
1 domainChain Tview chain
1 domainChain Uview chain
2 domainsChain Vview chain
6 domainsChain wview chain
2 domainsChain Wview chain
1 domainChain yview chain
2 domainsAll Domains (79)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 7 | e9fmd71 | 7:243-411 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 2 | 7 | e9fmd72 | 7:22-242 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 3 | 8 | e9fmd81 | 8:64-154 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 4 | 9 | e9fmd91 | 9:3-143 | Mago_nashi | 861 → 861.1 → 861.1.1 |
| 5 | a | e9fmda1 | a:4-75 | LSM | 4 → 4.1 → 4.1.1 |
| 6 | A | e9fmdA1 | A:26-810 | PRO8NT,PROCN | 1038 → 1038.1 → 1038.1.1 |
| 7 | A | e9fmdA2 | A:811-1182 | RRM_4 | 304 → 304.48 → 304.48.1 |
| 8 | A | e9fmdA3 | A:1183-1502 | U6-snRNA_bdg,U5_2-snRNA_bdg | 4967 → 4967.1 → 4967.1.1 |
| 9 | A | e9fmdA4 | A:1755-2006 | PRP8_domainIV | 2484 → 2484.1 → 2484.1.1 |
| 10 | A | e9fmdA5 | A:1503-1754 | U6-snRNA_bdg | 2008 → 2008.1 → 2008.1.1 |
| 11 | A | e9fmdA6 | A:2067-2314 | JAB,PROCT | 2492 → 2492.1 → 2492.1.1 |
| 12 | b | e9fmdb1 | b:7-95 | LSM | 4 → 4.1 → 4.1.1 |
| 13 | B | e9fmdB1 | B:1312-1520 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 14 | B | e9fmdB2 | B:683-886 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 15 | B | e9fmdB3 | B:1825-1957 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 16 | B | e9fmdB4 | B:433-682 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 17 | B | e9fmdB5 | B:2016-2125 | Sec63 | 11 → 11.1 → 11.1.1 |
| 18 | B | e9fmdB6 | B:1723-1824 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 19 | B | e9fmdB7 | B:887-993 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 20 | B | e9fmdB8 | B:994-1125 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 21 | B | e9fmdB9 | B:1958-2015 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 22 | B | e9fmdB10 | B:1521-1722 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 23 | B | e9fmdB11 | B:1181-1311 | Sec63 | 11 → 11.1 → 11.1.1 |
| 24 | B | e9fmdB12 | B:1126-1180 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 25 | c | e9fmdc1 | c:2-81 | LSM | 4 → 4.1 → 4.1.1 |
| 26 | C | e9fmdC1 | C:829-957 | EFG_C | 304 → 304.24 → 304.24.1 |
| 27 | C | e9fmdC2 | C:581-659 | EFG_III | 304 → 304.24 → 304.24.1 |
| 28 | C | e9fmdC3 | C:660-828 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 29 | C | e9fmdC4 | C:114-439 | GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 30 | C | e9fmdC5 | C:440-580 | GTP_EFTU_D2 | 1 → 1.1 → 1.1.7 |
| 31 | d | e9fmdd1 | d:26-73,d:93-118 | LSM | 4 → 4.1 → 4.1.1 |
| 32 | D | e9fmdD1 | D:39-94 | Isy1 | 192 → 192.13 → 192.13.1 |
| 33 | e | e9fmde1 | e:18-92 | LSM | 4 → 4.1 → 4.1.1 |
| 34 | E | e9fmdE1 | E:62-355 | WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 35 | f | e9fmdf1 | f:7-81 | LSM | 4 → 4.1 → 4.1.1 |
| 36 | g | e9fmdg1 | g:4-76 | LSM | 4 → 4.1 → 4.1.1 |
| 37 | h | e9fmdh1 | h:4-75 | LSM | 4 → 4.1 → 4.1.1 |
| 38 | H | e9fmdH1 | H:452-647 | MA3 | 109 → 109.4 → 109.4.1 |
| 39 | H | e9fmdH2 | H:149-345,H:450-451 | MIF4G | 109 → 109.4 → 109.4.1 |
| 40 | i | e9fmdi1 | i:7-95 | LSM | 4 → 4.1 → 4.1.1 |
| 41 | I | e9fmdI1 | I:33-738 | TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N | 109 → 109.4 → 109.4.1 |
| 42 | j | e9fmdj1 | j:2-81 | LSM | 4 → 4.1 → 4.1.1 |
| 43 | J | e9fmdJ1 | J:214-802 | HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 | 109 → 109.4 → 109.4.1 |
| 44 | k | e9fmdk1 | k:26-73,k:93-118 | LSM | 4 → 4.1 → 4.1.1 |
| 45 | l | e9fmdl1 | l:18-92 | LSM | 4 → 4.1 → 4.1.1 |
| 46 | L | e9fmdL1 | L:8-64 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 47 | L | e9fmdL2 | L:62-110 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 48 | m | e9fmdm1 | m:7-81 | LSM | 4 → 4.1 → 4.1.1 |
| 49 | n | e9fmdn1 | n:4-76 | LSM | 4 → 4.1 → 4.1.1 |
| 50 | N | e9fmdN1 | N:3-144 | BUD31 | 3952 → 3952.1 → 3952.1.1 |
| 51 | o | e9fmdo1 | o:2-163 | LRR_9 | 207 → 207.1 → 207.1.1 |
| 52 | O | e9fmdO1 | O:227-308 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 53 | O | e9fmdO2 | O:19-89 | STL11_N | 376 → 376.1 → 376.1.3 |
| 54 | O | e9fmdO3 | O:90-218 | zf-CCCH_RBM22 | 906 → 906.1 → 906.1.1 |
| 55 | p | e9fmdp1 | p:3-96 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 56 | q | e9fmdq1 | q:68-134,q:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 57 | Q | e9fmdQ1 | Q:19-415 | Aquarius_N_1st | 109 → 109.4 → 109.4.1 |
| 58 | Q | e9fmdQ2 | Q:1135-1333 | AAA_12 | 2004 → 2004.1 → 2004.1.1 |
| 59 | Q | e9fmdQ3 | Q:416-492,Q:660-706,Q:795-1134 | ResIII, AAA_11 | 2004 → 2004.1 → 2004.1.1 |
| 60 | Q | e9fmdQ4 | Q:493-659 | Aquarius_N_2nd | 1 → 1.1 → 1.1.7 |
| 61 | Q | e9fmdQ5 | Q:707-753,Q:773-794 | Aquarius_N_3rd | 3940 → 3940.1 → 3940.1.1 |
| 62 | r | e9fmdr1 | r:68-134,r:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 63 | s | e9fmds1 | s:68-134,s:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 64 | S | e9fmdS1 | S:3-166 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 65 | t | e9fmdt1 | t:68-134,t:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 66 | T | e9fmdT1 | T:184-496 | WD40 | 5 → 5.1 → 5.1.4 |
| 67 | U | e9fmdU1 | U:62-196 | 7101.1.1.0 | 7101 → 7101.1 → 7101.1.1 |
| 68 | U | e9fmdU2 | U:265-371 | Slu7 | 7101 → 7101.1 → 7101.1.1 |
| 69 | V | e9fmdV1 | V:260-355,V:609-610,V:800-805 | S1 | 2 → 2.1 → 2.1.1 |
| 70 | V | e9fmdV2 | V:566-608,V:611-743 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 71 | V | e9fmdV3 | V:744-799,V:806-911,V:914-917 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 72 | V | e9fmdV4 | V:912-913,V:918-975,V:977-987 | HA2_N | 101 → 101.1 → 101.1.2 |
| 73 | V | e9fmdV5 | V:961-1108 | HA2_N,HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 74 | V | e9fmdV6 | V:1109-1183 | OB_NTP_bind | 2 → 2.1 → 2.1.1 |
| 75 | w | e9fmdw1 | w:489-646 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 76 | w | e9fmdw2 | w:102-433 | WD40 | 5 → 5.1 → 5.1.5 |
| 77 | W | e9fmdW1 | W:273-579 | WD40 | 5 → 5.1 → 5.1.4 |
| 78 | y | e9fmdy1 | y:142-299 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 79 | y | e9fmdy2 | y:7-82 | RRM_1 | 304 → 304.9 → 304.9.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors