ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e9j0oE2 - ECOD Domain | ECOD

ECOD/Domains/e9j0oE2

e9j0oE2

UID: 005301456

PDB

Range: E:2-138
PDB: 9J0O chain E(all domains)
UniProt: I3LSI7 (all domains)
Gene: POLR2E

Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC1 (DNA-directed RNA polymerase II subunit E) (RPB5 homolog)

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNA_pol_Rpb5_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupEukaryotic RPB5 N-terminal domain(2008.3)

TT-groupEukaryotic RPB5 N-terminal domain(2008.3.1)

FFamilyRNA_pol_Rpb5_N(2008.3.1.1)

Pfam Families

PF03871RNA_pol_Rpb5_N

RNA polymerase Rpb5, N-terminal domain

ClanCL0236PDDEXK

External Links

ECOD PDB View: 9J0O RCSB PDB: 9J0O PDBe: 9J0O UniProt: I3LSI7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure