ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4fmcB1 - ECOD Domain | ECOD

ECOD/Domains/e4fmcB1

e4fmcB1

UID: 000970619

PDB

Range: B:6-166
PDB: 4FMC chain B(all domains)
UniProt: P62820 (all domains)
Gene: RAB1A

Molecule: Ras-related protein Rab-1A

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Aluminum fluorideAF3
Magnesium ionMG

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4FMC RCSB PDB: 4FMC PDBe: 4FMC UniProt: P62820

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Triethylene glycol)

Triethylene glycolPGE
DrugBank DB02327within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.