ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4efdD1 - ECOD Domain | ECOD

ECOD/Domains/e4efdD1

e4efdD1

UID: 000982776

PDB

Range: D:198-516
PDB: 4EFD chain D(all domains)
UniProt: Q385B0 (all domains)
Gene: Tb11.02.4440

Molecule: Aminopeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_M17 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M17(2011.1.1.3)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal
Unknown atom or ionUNX

+ 2 additives (Sulfate ion, Glycerol)

Sulfate ionSO4

Pfam Families

PF00883Peptidase_M17

Cytosol aminopeptidase family, catalytic domain

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 4EFD RCSB PDB: 4EFD PDBe: 4EFD UniProt: Q385B0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.