PDB 1YYM
X-RAY DIFFRACTION2.20 Å0 chains14 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Hview chain
2 domainsChain Lview chain
2 domainsChain Mview chain
1 domainChain Pview chain
2 domainsChain Qview chain
2 domainsChain Rview chain
2 domainsChain Sview chain
1 domainAll Domains (14)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | G | e1yymG1 | G:83-127,G:195-255,G:474-492 | GP120 | 1061 → 1061.1 → 1061.1.1 |
| 2 | G | e1yymG2 | G:256-297,G:330-473 | GP120 | 259 → 259.1 → 259.1.1 |
| 3 | H | e1yymH1 | H:1-113 | V-set | 11 → 11.1 → 11.1.1 |
| 4 | H | e1yymH2 | H:114-214 | C1-set | 11 → 11.1 → 11.1.1 |
| 5 | L | e1yymL1 | L:1-107 | V-set | 11 → 11.1 → 11.1.1 |
| 6 | L | e1yymL2 | L:108-212 | C1-set | 11 → 11.1 → 11.1.1 |
| 7 | M | e1yymM1 | M:1-27 | 387.1.5.0 | 387 → 387.1 → 387.1.5 |
| 8 | P | e1yymP1 | P:1083-1127,P:1195-1255,P:1474-1492 | GP120 | 1061 → 1061.1 → 1061.1.1 |
| 9 | P | e1yymP2 | P:1256-1297,P:1330-1473 | GP120 | 259 → 259.1 → 259.1.1 |
| 10 | Q | e1yymQ1 | Q:1001-1107 | V-set | 11 → 11.1 → 11.1.1 |
| 11 | Q | e1yymQ2 | Q:1108-1212 | C1-set | 11 → 11.1 → 11.1.1 |
| 12 | R | e1yymR1 | R:1001-1113 | V-set | 11 → 11.1 → 11.1.1 |
| 13 | R | e1yymR2 | R:1114-1214 | C1-set | 11 → 11.1 → 11.1.1 |
| 14 | S | e1yymS1 | S:1001-1027 | 387.1.5.0 | 387 → 387.1 → 387.1.5 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors