PDB 2YBB
ELECTRON MICROSCOPY0 chains66 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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2 domainsChain Nview chain
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1 domainAll Domains (66)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 1 | e2ybb11 | 1:334-438 | NADH_4Fe-4S | 633 → 633.11 → 633.11.1 |
| 2 | 1 | e2ybb12 | 1:250-333 | SLBB | 221 → 221.1 → 221.1.4 |
| 3 | 1 | e2ybb13 | 1:2-249 | Complex1_51K | 4335 → 4335.1 → 4335.1.1 |
| 4 | 2 | e2ybb21 | 2:75-180 | 2Fe-2S_thioredx | 2485 → 2485.1 → 2485.1.1 |
| 5 | 2 | e2ybb22 | 2:2-74 | 2Fe-2S_thioredx | 3697 → 3697.1 → 3697.1.1 |
| 6 | 3 | e2ybb34 | 3:1-95 | Fer2_4 | 221 → 221.1 → 221.1.1 |
| 7 | 3 | e2ybb37 | 3:162-246 | Nqo3_Fer4 | 205 → 205.1 → 205.1.1 |
| 8 | 3 | e2ybb38 | 3:686-777 | Molydop_binding | 1 → 1.1 → 1.1.2 |
| 9 | 3 | e2ybb39 | 3:96-161 | NADH-G_4Fe-4S_3 | 5100 → 5100.1 → 5100.1.1 |
| 10 | 3 | e2ybb35 | 3:375-541 | 2003.2.1.0 | 2003 → 2003.2 → 2003.2.1 |
| 11 | 3 | e2ybb36 | 3:305-379,3:542-685 | Molybdopterin | 2003 → 2003.2 → 2003.2.1 |
| 12 | 3 | e2ybb310 | 3:247-304 | Molybdop_Fe4S4 | 1001 → 1001.1 → 1001.1.1 |
| 13 | 4 | e2ybb41 | 4:107-304 | Complex1_49kDa | 4025 → 4025.1 → 4025.1.1 |
| 14 | 4 | e2ybb42 | 4:25-63,4:378-409 | Complex1_49kDa | 244 → 244.4 → 244.4.1 |
| 15 | 4 | e2ybb43 | 4:64-106,4:305-377 | Complex1_49kDa | 244 → 244.4 → 244.4.1 |
| 16 | 5 | e2ybb51 | 5:1-196 | Complex1_30kDa | 4272 → 4272.1 → 4272.1.1 |
| 17 | 6 | e2ybb61 | 6:15-175 | Oxidored_q6 | 2007 → 2007.1 → 2007.1.3 |
| 18 | 7 | e2ybb71 | 7:3-129 | NADH_Oxid_Nqo15 | 241 → 241.2 → 241.2.1 |
| 19 | 8 | e2ybb81 | 8:26-179 | Fer4+Fer4_7 | 205 → 205.1 → 205.1.1 |
| 20 | a | e2ybba1 | a:1-233 | Peptidase_M16,Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 21 | a | e2ybba2 | a:234-443 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 22 | A | e2ybbA1 | A:1-233 | Peptidase_M16,Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 23 | A | e2ybbA2 | A:234-443 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 24 | b | e2ybbb1 | b:12-235 | Peptidase_M16 | 309 → 309.1 → 309.1.1 |
| 25 | b | e2ybbb2 | b:236-439 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 26 | B | e2ybbB1 | B:17-235 | Peptidase_M16 | 309 → 309.1 → 309.1.1 |
| 27 | B | e2ybbB2 | B:236-439 | Peptidase_M16_C | 309 → 309.1 → 309.1.1 |
| 28 | c | e2ybbc1 | c:261-379 | Cytochrom_B_C | 5068 → 5068.1 → 5068.1.1 |
| 29 | c | e2ybbc2 | c:10-260 | Cytochrome_B, Cytochrom_B_N_2 | 5069 → 5069.1 → 5069.1.1 |
| 30 | C | e2ybbC1 | C:15-260 | Cytochrome_B, Cytochrom_B_N_2 | 5069 → 5069.1 → 5069.1.1 |
| 31 | C | e2ybbC2 | C:261-379 | Cytochrom_B_C | 5068 → 5068.1 → 5068.1.1 |
| 32 | d | e2ybbd1 | d:1-195 | Cytochrom_C1 | 107 → 107.1 → 107.1.1 |
| 33 | d | e2ybbd2 | d:196-241 | 5013.1.1.0 | 5013 → 5013.1 → 5013.1.1 |
| 34 | D | e2ybbD1 | D:1-195 | Cytochrom_C1 | 107 → 107.1 → 107.1.1 |
| 35 | D | e2ybbD2 | D:196-241 | 5013.1.1.0 | 5013 → 5013.1 → 5013.1.1 |
| 36 | e | e2ybbe2 | e:1-69 | UCR_TM | 5014 → 5014.1 → 5014.1.1 |
| 37 | e | e2ybbe3 | e:70-196 | Rieske | 66 → 66.1 → 66.1.1 |
| 38 | E | e2ybbE2 | E:1-69 | UCR_TM | 5014 → 5014.1 → 5014.1.1 |
| 39 | E | e2ybbE3 | E:70-196 | Rieske | 66 → 66.1 → 66.1.1 |
| 40 | f | e2ybbf1 | f:12-110 | UCR_14kD | 5070 → 5070.1 → 5070.1.1 |
| 41 | F | e2ybbF1 | F:12-110 | UCR_14kD | 5070 → 5070.1 → 5070.1.1 |
| 42 | g | e2ybbg1 | g:1-76 | UcrQ | 5016 → 5016.1 → 5016.1.1 |
| 43 | G | e2ybbG1 | G:1-75 | UcrQ | 5016 → 5016.1 → 5016.1.1 |
| 44 | h | e2ybbh1 | h:13-78 | UCR_hinge | 5071 → 5071.1 → 5071.1.1 |
| 45 | H | e2ybbH1 | H:13-78 | UCR_hinge | 5071 → 5071.1 → 5071.1.1 |
| 46 | i | e2ybbi1 | i:32-78 | Ubiq-Cytc-red_N | 852 → 852.1 → 852.1.1 |
| 47 | I | e2ybbI1 | I:32-78 | Ubiq-Cytc-red_N | 852 → 852.1 → 852.1.1 |
| 48 | j | e2ybbj1 | j:1-62 | UCR_UQCRX_QCR9 | 5017 → 5017.1 → 5017.1.1 |
| 49 | J | e2ybbJ1 | J:1-62 | UCR_UQCRX_QCR9 | 5017 → 5017.1 → 5017.1.1 |
| 50 | k | e2ybbk1 | k:15-36 | UCR_6-4kD | 5018 → 5018.1 → 5018.1.1 |
| 51 | K | e2ybbK1 | K:15-36 | UCR_6-4kD | 5018 → 5018.1 → 5018.1.1 |
| 52 | L | e2ybbL1 | L:1-514 | COX1 | 5038 → 5038.1 → 5038.1.1 |
| 53 | M | e2ybbM1 | M:1-90 | COX2_TM | 5040 → 5040.1 → 5040.1.1 |
| 54 | M | e2ybbM2 | M:91-227 | COX2 | 3156 → 3156.1 → 3156.1.1 |
| 55 | N | e2ybbN1 | N:1-261 | COX3 | 5039 → 5039.1 → 5039.1.1 |
| 56 | O | e2ybbO1 | O:4-147 | COX4 | 5003 → 5003.1 → 5003.1.1 |
| 57 | P | e2ybbP1 | P:1-109 | COX5A | 109 → 109.7 → 109.7.1 |
| 58 | Q | e2ybbQ1 | Q:1-98 | COX5B | 375 → 375.1 → 375.1.8 |
| 59 | R | e2ybbR1 | R:1-84 | COX6A | 5004 → 5004.1 → 5004.1.1 |
| 60 | S | e2ybbS1 | S:11-85 | COX6B | 540 → 540.1 → 540.1.1 |
| 61 | T | e2ybbT1 | T:1-73 | COX6C | 5005 → 5005.1 → 5005.1.1 |
| 62 | U | e2ybbU1 | U:1-57 | COX7a | 5006 → 5006.1 → 5006.1.1 |
| 63 | V | e2ybbV1 | V:6-54 | COX7B | 5007 → 5007.1 → 5007.1.1 |
| 64 | W | e2ybbW1 | W:1-47 | COX7C | 5008 → 5008.1 → 5008.1.1 |
| 65 | X | e2ybbX1 | X:1-43 | COX8 | 5009 → 5009.1 → 5009.1.1 |
| 66 | Y | e2ybbY1 | Y:1-104 | Cytochrom_C | 107 → 107.1 → 107.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors