PDB 3IYD
ELECTRON MICROSCOPY0 chains30 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
10 domainsChain Eview chain
1 domainChain Gview chain
2 domainsChain Hview chain
2 domainsAll Domains (30)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e3iydA1 | A:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 2 | A | e3iydA2 | A:237-328 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 3 | A | e3iydA3 | A:2-52,A:179-236 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e3iydB3 | B:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | B | e3iydB4 | B:1-52,B:174-235 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 6 | C | e3iydC8 | C:10-152,C:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 7 | C | e3iydC9 | C:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 8 | C | e3iydC11 | C:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 9 | C | e3iydC14 | C:153-226,C:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 10 | C | e3iydC5 | C:828-942,C:1042-1062 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | C | e3iydC6 | C:791-828,C:1060-1125,C:1180-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | C | e3iydC7 | C:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 13 | D | e3iydD01 | D:175-347 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 14 | D | e3iydD02 | D:348-379,D:420-500 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 15 | D | e3iydD03 | D:380-419 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 16 | D | e3iydD04 | D:501-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 17 | D | e3iydD05 | D:639-811 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 18 | D | e3iydD06 | D:812-938 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 19 | D | e3iydD07 | D:939-1023 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 20 | D | e3iydD08 | D:1024-1128 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 21 | D | e3iydD09 | D:1176-1213 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | D | e3iydD10 | D:1214-1375 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 23 | E | e3iydE1 | E:2-91 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 24 | F | e3iydF1 | F:516-611 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 25 | F | e3iydF2 | F:447-515 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 26 | F | e3iydF3 | F:114-173,F:212-446 | Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 27 | G | e3iydG1 | G:9-137 | cNMP_binding | 10 → 10.12 → 10.12.1 |
| 28 | G | e3iydG2 | G:138-209 | HTH_Crp_2 | 101 → 101.1 → 101.1.2 |
| 29 | H | e3iydH1 | H:9-137 | cNMP_binding | 10 → 10.12 → 10.12.1 |
| 30 | H | e3iydH2 | H:138-209 | HTH_Crp_2 | 101 → 101.1 → 101.1.2 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors