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PDB 4YBB

X-RAY DIFFRACTION2.00 Å0 chains113 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (113)

#ChainDomain IDRangeFamilyClassification
1ABe4ybbAB1AB:4-227Ribosomal_S22007 → 2007.6 → 2007.6.1
2ACe4ybbAC1AC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
3ACe4ybbAC2AC:2-106KH_2327 → 327.11 → 327.11.1
4ADe4ybbAD1AD:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
5AEe4ybbAE1AE:10-76Ribosomal_S5330 → 330.1 → 330.1.1
6AEe4ybbAE2AE:77-164Ribosomal_S5_C212 → 212.1 → 212.1.1
7AFe4ybbAF1AF:1-106Ribosomal_S6304 → 304.12 → 304.12.1
8AGe4ybbAG1AG:2-152Ribosomal_S7167 → 167.1 → 167.1.1
9AHe4ybbAH1AH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
10AHe4ybbAH2AH:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
11AIe4ybbAI1AI:4-130Ribosomal_S9212 → 212.1 → 212.1.1
12AJe4ybbAJ1AJ:4-102Ribosomal_S10304 → 304.44 → 304.44.1
13AKe4ybbAK1AK:13-129Ribosomal_S112484 → 2484.1 → 2484.1.1
14ALe4ybbAL1AL:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
15AMe4ybbAM1AM:2-115Ribosomal_S13102 → 102.2 → 102.2.1
16ANe4ybbAN1AN:2-101Ribosomal_S14377 → 377.1 → 377.1.1
17AOe4ybbAO1AO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18APe4ybbAP1AP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
19AQe4ybbAQ1AQ:4-83Ribosomal_S172 → 2.1 → 2.1.1
20ARe4ybbAR1AR:20-74Ribosomal_S18101 → 101.1 → 101.1.1
21ASe4ybbAS1AS:3-81Ribosomal_S19838 → 838.1 → 838.1.1
22ATe4ybbAT1AT:2-87Ribosomal_S20p604 → 604.9 → 604.9.1
23AUe4ybbAU1AU:2-57Ribosomal_S213666 → 3666.1 → 3666.1.1
24BBe4ybbBB1BB:4-227Ribosomal_S22007 → 2007.6 → 2007.6.1
25BCe4ybbBC1BC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
26BCe4ybbBC2BC:2-106KH_2327 → 327.11 → 327.11.1
27BDe4ybbBD1BD:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
28BEe4ybbBE1BE:10-77Ribosomal_S5330 → 330.1 → 330.1.1
29BEe4ybbBE2BE:78-159Ribosomal_S5_C212 → 212.1 → 212.1.1
30BFe4ybbBF1BF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
31BGe4ybbBG1BG:2-152Ribosomal_S7167 → 167.1 → 167.1.1
32BHe4ybbBH1BH:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
33BHe4ybbBH2BH:2-67Ribosomal_S8320 → 320.2 → 320.2.1
34BIe4ybbBI1BI:4-130Ribosomal_S9212 → 212.1 → 212.1.1
35BJe4ybbBJ1BJ:5-102Ribosomal_S10304 → 304.44 → 304.44.1
36BKe4ybbBK1BK:13-129Ribosomal_S112484 → 2484.1 → 2484.1.1
37BLe4ybbBL1BL:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
38BMe4ybbBM1BM:2-115Ribosomal_S13102 → 102.2 → 102.2.1
39BNe4ybbBN1BN:2-101Ribosomal_S14377 → 377.1 → 377.1.1
40BOe4ybbBO1BO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
41BPe4ybbBP1BP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
42BQe4ybbBQ1BQ:4-83Ribosomal_S172 → 2.1 → 2.1.1
43BRe4ybbBR1BR:20-74Ribosomal_S18101 → 101.1 → 101.1.1
44BSe4ybbBS1BS:3-81Ribosomal_S19838 → 838.1 → 838.1.1
45BTe4ybbBT1BT:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
46BUe4ybbBU1BU:2-57Ribosomal_S213666 → 3666.1 → 3666.1.1
47C0e4ybbC01C0:2-59Ribosomal_L30887 → 887.1 → 887.1.1
48C1e4ybbC11C1:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
49C2e4ybbC21C2:4-53Ribosomal_L33375 → 375.1 → 375.1.1
50C3e4ybbC31C3:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
51C4e4ybbC41C4:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
52C5e4ybbC51C5:1-38Ribosomal_L36919 → 919.1 → 919.1.1
53CCe4ybbCC1CC:126-272Ribosomal_L2_C4 → 4.1 → 4.1.1
54CCe4ybbCC2CC:2-125Ribosomal_L22 → 2.1 → 2.1.1
55CDe4ybbCD1CD:1-209Ribosomal_L31 → 1.1 → 1.1.7
56CEe4ybbCE1CE:1-201Ribosomal_L47559 → 7559.1 → 7559.1.1
57CFe4ybbCF1CF:2-178Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
58CGe4ybbCG1CG:2-82Ribosomal_L6318 → 318.1 → 318.1.1
59CGe4ybbCG2CG:83-177Ribosomal_L6318 → 318.1 → 318.1.1
60CHe4ybbCH1CH:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
61CHe4ybbCH2CH:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
62CJe4ybbCJ1CJ:73-141Ribosomal_L11101 → 101.1 → 101.1.16
63CJe4ybbCJ2CJ:8-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
64CKe4ybbCK1CK:1-142Ribosomal_L132490 → 2490.2 → 2490.2.1
65CLe4ybbCL1CL:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
66CMe4ybbCM1CM:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
67CNe4ybbCN1CN:1-136325.1.5.0325 → 325.1 → 325.1.5
68COe4ybbCO1CO:1-120Ribosomal_L17218 → 218.3 → 218.3.1
69CPe4ybbCP1CP:2-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
70CQe4ybbCQ1CQ:2-115Ribosomal_L194 → 4.1 → 4.1.1
71CRe4ybbCR1CR:2-118Ribosomal_L20143 → 143.2 → 143.2.1
72CSe4ybbCS1CS:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
73CTe4ybbCT1CT:1-110Ribosomal_L22218 → 218.2 → 218.2.1
74CUe4ybbCU1CU:1-93Ribosomal_L23304 → 304.109 → 304.109.1
75CVe4ybbCV1CV:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
76CWe4ybbCW1CW:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
77CXe4ybbCX1CX:11-85325.1.8.0325 → 325.1 → 325.1.8
78CYe4ybbCY1CY:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
79CZe4ybbCZ1CZ:2-63Ribosomal_L29192 → 192.4 → 192.4.1
80D0e4ybbD01D0:2-59Ribosomal_L30887 → 887.1 → 887.1.1
81D1e4ybbD11D1:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
82D2e4ybbD21D2:4-54Ribosomal_L33375 → 375.1 → 375.1.1
83D3e4ybbD31D3:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
84D4e4ybbD41D4:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
85D5e4ybbD51D5:1-38Ribosomal_L36919 → 919.1 → 919.1.1
86DCe4ybbDC1DC:126-272Ribosomal_L2_C4 → 4.1 → 4.1.1
87DCe4ybbDC2DC:2-125Ribosomal_L22 → 2.1 → 2.1.1
88DDe4ybbDD1DD:1-209Ribosomal_L31 → 1.1 → 1.1.7
89DEe4ybbDE1DE:1-201Ribosomal_L47559 → 7559.1 → 7559.1.1
90DFe4ybbDF1DF:2-178Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
91DGe4ybbDG1DG:83-177Ribosomal_L6318 → 318.1 → 318.1.1
92DGe4ybbDG2DG:2-82Ribosomal_L6318 → 318.1 → 318.1.1
93DHe4ybbDH2DH:1-54Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
94DHe4ybbDH3DH:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
95DIe4ybbDI1DI:2-136Ribosomal_L10304 → 304.60 → 304.60.1
96DJe4ybbDJ1DJ:75-141Ribosomal_L11101 → 101.1 → 101.1.16
97DJe4ybbDJ2DJ:8-74Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
98DKe4ybbDK1DK:1-142Ribosomal_L132490 → 2490.2 → 2490.2.1
99DLe4ybbDL1DL:1-123Ribosomal_L143174 → 3174.1 → 3174.1.1
100DMe4ybbDM1DM:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
101DNe4ybbDN1DN:1-136325.1.5.0325 → 325.1 → 325.1.5
102DOe4ybbDO1DO:1-125Ribosomal_L17218 → 218.3 → 218.3.1
103DPe4ybbDP1DP:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
104DQe4ybbDQ1DQ:2-115Ribosomal_L194 → 4.1 → 4.1.1
105DRe4ybbDR1DR:2-118Ribosomal_L20143 → 143.2 → 143.2.1
106DSe4ybbDS1DS:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
107DTe4ybbDT1DT:1-110Ribosomal_L22218 → 218.2 → 218.2.1
108DUe4ybbDU1DU:1-93Ribosomal_L23304 → 304.109 → 304.109.1
109DVe4ybbDV1DV:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
110DWe4ybbDW1DW:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
111DXe4ybbDX1DX:10-85325.1.8.0325 → 325.1 → 325.1.8
112DYe4ybbDY1DY:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
113DZe4ybbDZ1DZ:2-63Ribosomal_L29192 → 192.4 → 192.4.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors