Home/PDB

PDB 4YPB

X-RAY DIFFRACTION3.40 Å0 chains112 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

All Domains (112)

#ChainDomain IDRangeFamilyClassification
1QBe4ypbQB1QB:5-240Ribosomal_S22007 → 2007.6 → 2007.6.1
2QCe4ypbQC1QC:2-106KH_2327 → 327.11 → 327.11.1
3QCe4ypbQC2QC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
4QDe4ypbQD1QD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
5QEe4ypbQE1QE:2-73Ribosomal_S5330 → 330.1 → 330.1.1
6QEe4ypbQE2QE:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
7QFe4ypbQF1QF:1-101Ribosomal_S6304 → 304.12 → 304.12.1
8QGe4ypbQG1QG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
9QHe4ypbQH1QH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
10QHe4ypbQH2QH:1-66Ribosomal_S8320 → 320.2 → 320.2.1
11QIe4ypbQI1QI:1-128Ribosomal_S9212 → 212.1 → 212.1.1
12QJe4ypbQJ1QJ:3-101Ribosomal_S10304 → 304.44 → 304.44.1
13QKe4ypbQK1QK:9-129Ribosomal_S112484 → 2484.1 → 2484.1.1
14QLe4ypbQL1QL:5-129Ribosom_S12_S232 → 2.1 → 2.1.1
15QMe4ypbQM1QM:2-119Ribosomal_S13102 → 102.2 → 102.2.1
16QNe4ypbQN1QN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
17QOe4ypbQO1QO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18QPe4ypbQP1QP:1-84Ribosomal_S16837 → 837.1 → 837.1.1
19QQe4ypbQQ1QQ:2-101Ribosomal_S172 → 2.1 → 2.1.1
20QRe4ypbQR1QR:18-88Ribosomal_S18101 → 101.1 → 101.1.1
21QSe4ypbQS1QS:4-85Ribosomal_S19838 → 838.1 → 838.1.1
22QTe4ypbQT1QT:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
23QYe4ypbQY1QY:2-91HigB-like_toxin4312 → 4312.1 → 4312.1.1
24R0e4ypbR01R0:3-85Ribosomal_L27325 → 325.1 → 325.1.8
25R1e4ypbR11R1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
26R2e4ypbR21R2:4-72Ribosomal_L29192 → 192.4 → 192.4.1
27R3e4ypbR31R3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
28R4e4ypbR41R4:2-71Ribosomal_L314987 → 4987.1 → 4987.1.1
29R5e4ypbR51R5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
30R6e4ypbR61R6:6-53Ribosomal_L33375 → 375.1 → 375.1.1
31R7e4ypbR71R7:1-49Ribosomal_L343074 → 3074.1 → 3074.1.1
32R8e4ypbR81R8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
33R9e4ypbR91R9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
34RDe4ypbRD1RD:2-126Ribosomal_L22 → 2.1 → 2.1.1
35RDe4ypbRD2RD:127-273Ribosomal_L2_C4 → 4.1 → 4.1.1
36REe4ypbRE1RE:1-205Ribosomal_L31 → 1.1 → 1.1.7
37RFe4ypbRF1RF:1-208Ribosomal_L47559 → 7559.1 → 7559.1.1
38RGe4ypbRG1RG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
39RHe4ypbRH1RH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
40RHe4ypbRH2RH:83-171Ribosomal_L6318 → 318.1 → 318.1.1
41RIe4ypbRI1RI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
42RIe4ypbRI2RI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
43RNe4ypbRN1RN:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
44ROe4ypbRO1RO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
45RPe4ypbRP1RP:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
46RQe4ypbRQ1RQ:1-140Ribosomal_L16325 → 325.1 → 325.1.5
47RRe4ypbRR1RR:2-118Ribosomal_L17218 → 218.3 → 218.3.1
48RSe4ypbRS1RS:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
49RTe4ypbRT1RT:1-137Ribosomal_L194 → 4.1 → 4.1.1
50RUe4ypbRU1RU:2-118Ribosomal_L20143 → 143.2 → 143.2.1
51RVe4ypbRV1RV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
52RWe4ypbRW1RW:1-113Ribosomal_L22218 → 218.2 → 218.2.1
53RXe4ypbRX1RX:3-94Ribosomal_L23304 → 304.109 → 304.109.1
54RYe4ypbRY1RY:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
55RZe4ypbRZ1RZ:93-176Ribosomal_TL5_C240 → 240.1 → 240.1.1
56RZe4ypbRZ2RZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
57XBe4ypbXB1XB:5-240Ribosomal_S22007 → 2007.6 → 2007.6.1
58XCe4ypbXC1XC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
59XCe4ypbXC2XC:2-106KH_2327 → 327.11 → 327.11.1
60XDe4ypbXD1XD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
61XEe4ypbXE1XE:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
62XEe4ypbXE2XE:2-73Ribosomal_S5330 → 330.1 → 330.1.1
63XFe4ypbXF1XF:1-101Ribosomal_S6304 → 304.12 → 304.12.1
64XGe4ypbXG1XG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
65XHe4ypbXH1XH:1-66Ribosomal_S8320 → 320.2 → 320.2.1
66XHe4ypbXH2XH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
67XIe4ypbXI1XI:1-128Ribosomal_S9212 → 212.1 → 212.1.1
68XJe4ypbXJ1XJ:3-101Ribosomal_S10304 → 304.44 → 304.44.1
69XKe4ypbXK1XK:9-129Ribosomal_S112484 → 2484.1 → 2484.1.1
70XLe4ypbXL1XL:5-129Ribosom_S12_S232 → 2.1 → 2.1.1
71XMe4ypbXM1XM:2-119Ribosomal_S13102 → 102.2 → 102.2.1
72XNe4ypbXN1XN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
73XOe4ypbXO1XO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
74XPe4ypbXP1XP:1-84Ribosomal_S16837 → 837.1 → 837.1.1
75XQe4ypbXQ1XQ:2-101Ribosomal_S172 → 2.1 → 2.1.1
76XRe4ypbXR1XR:18-88Ribosomal_S18101 → 101.1 → 101.1.1
77XSe4ypbXS1XS:4-85Ribosomal_S19838 → 838.1 → 838.1.1
78XTe4ypbXT1XT:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
79XYe4ypbXY1XY:2-91HigB-like_toxin4312 → 4312.1 → 4312.1.1
80Y0e4ypbY01Y0:3-85Ribosomal_L27325 → 325.1 → 325.1.8
81Y1e4ypbY11Y1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
82Y2e4ypbY21Y2:4-72Ribosomal_L29192 → 192.4 → 192.4.1
83Y3e4ypbY31Y3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
84Y4e4ypbY41Y4:2-71Ribosomal_L314987 → 4987.1 → 4987.1.1
85Y5e4ypbY51Y5:2-58Ribosomal_L32p375 → 375.1 → 375.1.1
86Y6e4ypbY61Y6:6-53Ribosomal_L33375 → 375.1 → 375.1.1
87Y7e4ypbY71Y7:1-49Ribosomal_L343074 → 3074.1 → 3074.1.1
88Y8e4ypbY81Y8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
89Y9e4ypbY91Y9:2-37Ribosomal_L36919 → 919.1 → 919.1.1
90YDe4ypbYD1YD:2-126Ribosomal_L22 → 2.1 → 2.1.1
91YDe4ypbYD2YD:127-273Ribosomal_L2_C4 → 4.1 → 4.1.1
92YEe4ypbYE1YE:1-205Ribosomal_L31 → 1.1 → 1.1.7
93YFe4ypbYF1YF:1-208Ribosomal_L47559 → 7559.1 → 7559.1.1
94YGe4ypbYG1YG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
95YHe4ypbYH1YH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
96YHe4ypbYH2YH:83-171Ribosomal_L6318 → 318.1 → 318.1.1
97YIe4ypbYI1YI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
98YIe4ypbYI2YI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
99YNe4ypbYN1YN:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
100YOe4ypbYO1YO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
101YPe4ypbYP1YP:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
102YQe4ypbYQ1YQ:1-139Ribosomal_L16325 → 325.1 → 325.1.5
103YRe4ypbYR1YR:2-118Ribosomal_L17218 → 218.3 → 218.3.1
104YSe4ypbYS1YS:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
105YTe4ypbYT1YT:1-137Ribosomal_L194 → 4.1 → 4.1.1
106YUe4ypbYU1YU:2-118Ribosomal_L20143 → 143.2 → 143.2.1
107YVe4ypbYV1YV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
108YWe4ypbYW1YW:1-113Ribosomal_L22218 → 218.2 → 218.2.1
109YXe4ypbYX1YX:3-94Ribosomal_L23304 → 304.109 → 304.109.1
110YYe4ypbYY1YY:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
111YZe4ypbYZ1YZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
112YZe4ypbYZ2YZ:93-183Ribosomal_TL5_C240 → 240.1 → 240.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors