PDB 4YPB
X-RAY DIFFRACTION3.40 Å0 chains112 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain QBview chain
1 domainChain QCview chain
2 domainsChain QDview chain
1 domainChain QEview chain
2 domainsChain QFview chain
1 domainChain QGview chain
1 domainChain QHview chain
2 domainsChain QIview chain
1 domainChain QJview chain
1 domainChain QKview chain
1 domainChain QLview chain
1 domainChain QMview chain
1 domainChain QNview chain
1 domainChain QOview chain
1 domainChain QPview chain
1 domainChain QQview chain
1 domainChain QRview chain
1 domainChain QSview chain
1 domainChain QTview chain
1 domainChain QYview chain
1 domainChain R0view chain
1 domainChain R1view chain
1 domainChain R2view chain
1 domainChain R3view chain
1 domainChain R4view chain
1 domainChain R5view chain
1 domainChain R6view chain
1 domainChain R7view chain
1 domainChain R8view chain
1 domainChain R9view chain
1 domainChain RDview chain
2 domainsChain REview chain
1 domainChain RFview chain
1 domainChain RGview chain
1 domainChain RHview chain
2 domainsChain RIview chain
2 domainsChain RNview chain
1 domainChain ROview chain
1 domainChain RPview chain
1 domainChain RQview chain
1 domainChain RRview chain
1 domainChain RSview chain
1 domainChain RTview chain
1 domainChain RUview chain
1 domainChain RVview chain
1 domainChain RWview chain
1 domainChain RXview chain
1 domainChain RYview chain
1 domainChain RZview chain
2 domainsChain XBview chain
1 domainChain XCview chain
2 domainsChain XDview chain
1 domainChain XEview chain
2 domainsChain XFview chain
1 domainChain XGview chain
1 domainChain XHview chain
2 domainsChain XIview chain
1 domainChain XJview chain
1 domainChain XKview chain
1 domainChain XLview chain
1 domainChain XMview chain
1 domainChain XNview chain
1 domainChain XOview chain
1 domainChain XPview chain
1 domainChain XQview chain
1 domainChain XRview chain
1 domainChain XSview chain
1 domainChain XTview chain
1 domainChain XYview chain
1 domainChain Y0view chain
1 domainChain Y1view chain
1 domainChain Y2view chain
1 domainChain Y3view chain
1 domainChain Y4view chain
1 domainChain Y5view chain
1 domainChain Y6view chain
1 domainChain Y7view chain
1 domainChain Y8view chain
1 domainChain Y9view chain
1 domainChain YDview chain
2 domainsChain YEview chain
1 domainChain YFview chain
1 domainChain YGview chain
1 domainChain YHview chain
2 domainsChain YIview chain
2 domainsChain YNview chain
1 domainChain YOview chain
1 domainChain YPview chain
1 domainChain YQview chain
1 domainChain YRview chain
1 domainChain YSview chain
1 domainChain YTview chain
1 domainChain YUview chain
1 domainChain YVview chain
1 domainChain YWview chain
1 domainChain YXview chain
1 domainChain YYview chain
1 domainChain YZview chain
2 domainsAll Domains (112)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | QB | e4ypbQB1 | QB:5-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 2 | QC | e4ypbQC1 | QC:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 3 | QC | e4ypbQC2 | QC:107-207 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 4 | QD | e4ypbQD1 | QD:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 5 | QE | e4ypbQE1 | QE:2-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 6 | QE | e4ypbQE2 | QE:74-155 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 7 | QF | e4ypbQF1 | QF:1-101 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 8 | QG | e4ypbQG1 | QG:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 9 | QH | e4ypbQH1 | QH:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 10 | QH | e4ypbQH2 | QH:1-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 11 | QI | e4ypbQI1 | QI:1-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 12 | QJ | e4ypbQJ1 | QJ:3-101 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 13 | QK | e4ypbQK1 | QK:9-129 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 14 | QL | e4ypbQL1 | QL:5-129 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 15 | QM | e4ypbQM1 | QM:2-119 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 16 | QN | e4ypbQN1 | QN:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 17 | QO | e4ypbQO1 | QO:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 18 | QP | e4ypbQP1 | QP:1-84 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 19 | e4ypbQQ1 | QQ:2-101 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 | |
| 20 | QR | e4ypbQR1 | QR:18-88 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 21 | QS | e4ypbQS1 | QS:4-85 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 22 | QT | e4ypbQT1 | QT:8-106 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 23 | QY | e4ypbQY1 | QY:2-91 | HigB-like_toxin | 4312 → 4312.1 → 4312.1.1 |
| 24 | R0 | e4ypbR01 | R0:3-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 25 | R1 | e4ypbR11 | R1:2-98 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 26 | R2 | e4ypbR21 | R2:4-72 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 27 | R3 | e4ypbR31 | R3:2-60 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 28 | R4 | e4ypbR41 | R4:2-71 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 29 | R5 | e4ypbR51 | R5:2-60 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 30 | R6 | e4ypbR61 | R6:6-53 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 31 | R7 | e4ypbR71 | R7:1-49 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 32 | R8 | e4ypbR81 | R8:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 33 | R9 | e4ypbR91 | R9:1-37 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 34 | RD | e4ypbRD1 | RD:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 35 | RD | e4ypbRD2 | RD:127-273 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 36 | RE | e4ypbRE1 | RE:1-205 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 37 | RF | e4ypbRF1 | RF:1-208 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 38 | RG | e4ypbRG1 | RG:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 39 | RH | e4ypbRH1 | RH:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 40 | RH | e4ypbRH2 | RH:83-171 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 41 | RI | e4ypbRI1 | RI:1-53 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 42 | RI | e4ypbRI2 | RI:54-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 43 | RN | e4ypbRN1 | RN:1-138 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 44 | RO | e4ypbRO1 | RO:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 45 | RP | e4ypbRP1 | RP:1-150 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 46 | RQ | e4ypbRQ1 | RQ:1-140 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 47 | RR | e4ypbRR1 | RR:2-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 48 | RS | e4ypbRS1 | RS:2-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 49 | RT | e4ypbRT1 | RT:1-137 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 50 | RU | e4ypbRU1 | RU:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 51 | RV | e4ypbRV1 | RV:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 52 | RW | e4ypbRW1 | RW:1-113 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 53 | RX | e4ypbRX1 | RX:3-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 54 | RY | e4ypbRY1 | RY:2-103 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 55 | RZ | e4ypbRZ1 | RZ:93-176 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
| 56 | RZ | e4ypbRZ2 | RZ:1-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 57 | XB | e4ypbXB1 | XB:5-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 58 | XC | e4ypbXC1 | XC:107-207 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 59 | XC | e4ypbXC2 | XC:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 60 | XD | e4ypbXD1 | XD:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 61 | XE | e4ypbXE1 | XE:74-155 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 62 | XE | e4ypbXE2 | XE:2-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 63 | XF | e4ypbXF1 | XF:1-101 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 64 | XG | e4ypbXG1 | XG:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 65 | XH | e4ypbXH1 | XH:1-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 66 | XH | e4ypbXH2 | XH:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 67 | XI | e4ypbXI1 | XI:1-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 68 | XJ | e4ypbXJ1 | XJ:3-101 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 69 | XK | e4ypbXK1 | XK:9-129 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 70 | XL | e4ypbXL1 | XL:5-129 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 71 | XM | e4ypbXM1 | XM:2-119 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 72 | XN | e4ypbXN1 | XN:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 73 | XO | e4ypbXO1 | XO:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 74 | XP | e4ypbXP1 | XP:1-84 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 75 | XQ | e4ypbXQ1 | XQ:2-101 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 76 | XR | e4ypbXR1 | XR:18-88 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 77 | XS | e4ypbXS1 | XS:4-85 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 78 | XT | e4ypbXT1 | XT:8-106 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 79 | XY | e4ypbXY1 | XY:2-91 | HigB-like_toxin | 4312 → 4312.1 → 4312.1.1 |
| 80 | Y0 | e4ypbY01 | Y0:3-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 81 | Y1 | e4ypbY11 | Y1:2-98 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 82 | Y2 | e4ypbY21 | Y2:4-72 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 83 | Y3 | e4ypbY31 | Y3:2-60 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 84 | Y4 | e4ypbY41 | Y4:2-71 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 85 | Y5 | e4ypbY51 | Y5:2-58 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 86 | Y6 | e4ypbY61 | Y6:6-53 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 87 | Y7 | e4ypbY71 | Y7:1-49 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 88 | Y8 | e4ypbY81 | Y8:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 89 | Y9 | e4ypbY91 | Y9:2-37 | Ribosomal_L36 | 919 → 919.1 → 919.1.1 |
| 90 | YD | e4ypbYD1 | YD:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 91 | YD | e4ypbYD2 | YD:127-273 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 92 | YE | e4ypbYE1 | YE:1-205 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 93 | YF | e4ypbYF1 | YF:1-208 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 94 | YG | e4ypbYG1 | YG:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 95 | YH | e4ypbYH1 | YH:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 96 | YH | e4ypbYH2 | YH:83-171 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 97 | YI | e4ypbYI1 | YI:1-53 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 98 | YI | e4ypbYI2 | YI:54-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 99 | YN | e4ypbYN1 | YN:1-138 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 100 | YO | e4ypbYO1 | YO:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 101 | YP | e4ypbYP1 | YP:1-150 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 102 | YQ | e4ypbYQ1 | YQ:1-139 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 103 | YR | e4ypbYR1 | YR:2-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 104 | YS | e4ypbYS1 | YS:2-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 105 | YT | e4ypbYT1 | YT:1-137 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 106 | YU | e4ypbYU1 | YU:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 107 | YV | e4ypbYV1 | YV:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 108 | YW | e4ypbYW1 | YW:1-113 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 109 | YX | e4ypbYX1 | YX:3-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 110 | YY | e4ypbYY1 | YY:2-103 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 111 | YZ | e4ypbYZ1 | YZ:1-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 112 | YZ | e4ypbYZ2 | YZ:93-183 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors