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PDB 4YUU

X-RAY DIFFRACTION2.77 Å84 chains80 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain a1Photosystem II protein D1view chain
1 domain
Chain A1Photosystem II protein D1view chain
1 domain
Chain a2Photosystem II protein D1view chain
1 domain
Chain A2Photosystem II protein D1view chain
1 domain
Chain b1Photosystem II CP47 reaction center proteinview chain
2 domains
Chain B1Photosystem II CP47 reaction center proteinview chain
2 domains
Chain b2Photosystem II CP47 reaction center proteinview chain
2 domains
Chain B2Photosystem II CP47 reaction center proteinview chain
2 domains
Chain c1Photosystem II CP43 reaction center proteinview chain
1 domain
Chain C1Photosystem II CP43 reaction center proteinview chain
1 domain
Chain c2Photosystem II CP43 reaction center proteinview chain
1 domain
Chain C2Photosystem II CP43 reaction center proteinview chain
1 domain
Chain d1Photosystem II D2 proteinview chain
1 domain
Chain D1Photosystem II D2 proteinview chain
1 domain
Chain d2Photosystem II D2 proteinview chain
1 domain
Chain D2Photosystem II D2 proteinview chain
1 domain
Chain e1Cytochrome b559 subunit alphaview chain
1 domain
Chain E1Cytochrome b559 subunit alphaview chain
1 domain
Chain e2Cytochrome b559 subunit alphaview chain
1 domain
Chain E2Cytochrome b559 subunit alphaview chain
1 domain
Chain f1Cytochrome b559 subunit betaview chain
1 domain
Chain F1Cytochrome b559 subunit betaview chain
1 domain
Chain f2Cytochrome b559 subunit betaview chain
1 domain
Chain F2Cytochrome b559 subunit betaview chain
1 domain
Chain h1Photosystem II reaction center protein Hview chain
1 domain
Chain H1Photosystem II reaction center protein Hview chain
1 domain
Chain h2Photosystem II reaction center protein Hview chain
1 domain
Chain H2Photosystem II reaction center protein Hview chain
1 domain
Chain i1Photosystem II reaction center protein Iview chain
1 domain
Chain I1Photosystem II reaction center protein Iview chain
1 domain
Chain i2Photosystem II reaction center protein Iview chain
1 domain
Chain I2Photosystem II reaction center protein Iview chain
1 domain
Chain j1Photosystem II reaction center protein Jview chain
1 domain
Chain J1Photosystem II reaction center protein Jview chain
1 domain
Chain j2Photosystem II reaction center protein Jview chain
1 domain
Chain J2Photosystem II reaction center protein Jview chain
1 domain
Chain k1Photosystem II reaction center protein Kview chain
1 domain
Chain K1Photosystem II reaction center protein Kview chain
1 domain
Chain k2Photosystem II reaction center protein Kview chain
1 domain
Chain K2Photosystem II reaction center protein Kview chain
1 domain
Chain l1Photosystem II reaction center protein Lview chain
1 domain
Chain L1Photosystem II reaction center protein Lview chain
1 domain
Chain l2Photosystem II reaction center protein Lview chain
1 domain
Chain L2Photosystem II reaction center protein Lview chain
1 domain
Chain m1PHOTOSYSTEM II REACTION CENTER PROTEIN Mview chain
1 domain
Chain M1PHOTOSYSTEM II REACTION CENTER PROTEIN Mview chain
1 domain
Chain m2PHOTOSYSTEM II REACTION CENTER PROTEIN Mview chain
1 domain
Chain M2PHOTOSYSTEM II REACTION CENTER PROTEIN Mview chain
1 domain
Chain o1PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBOview chain
1 domain
Chain O1PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBOview chain
1 domain
Chain o2PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBOview chain
1 domain
Chain O2PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE, PSBOview chain
1 domain
Chain q1Extrinsic protein in photosystem IIview chain
1 domain
Chain Q2Extrinsic protein in photosystem IIview chain
1 domain
Chain t1Photosystem II reaction center protein Tview chain
1 domain
Chain T1Photosystem II reaction center protein Tview chain
1 domain
Chain t2Photosystem II reaction center protein Tview chain
1 domain
Chain T2Photosystem II reaction center protein Tview chain
1 domain
Chain u1Photosystem II 12 kDa extrinsic protein, chloroplasticview chain
1 domain
Chain U1Photosystem II 12 kDa extrinsic protein, chloroplasticview chain
1 domain
Chain u2Photosystem II 12 kDa extrinsic protein, chloroplasticview chain
1 domain
Chain U2Photosystem II 12 kDa extrinsic protein, chloroplasticview chain
1 domain
Chain v1Cytochrome c-550view chain
1 domain
Chain V1Cytochrome c-550view chain
1 domain
Chain v2Cytochrome c-550view chain
1 domain
Chain V2Cytochrome c-550view chain
1 domain
Chain x1PHOTOSYSTEM II REACTION CENTER PROTEIN Xview chain
1 domain
Chain X1PHOTOSYSTEM II REACTION CENTER PROTEIN Xview chain
1 domain
Chain x2PHOTOSYSTEM II REACTION CENTER PROTEIN Xview chain
1 domain
Chain X2PHOTOSYSTEM II REACTION CENTER PROTEIN Xview chain
1 domain
Chain y1Photosystem II reaction center protein Ycf12view chain
1 domain
Chain Y1Photosystem II reaction center protein Ycf12view chain
1 domain
Chain y2Photosystem II reaction center protein Ycf12view chain
1 domain
Chain Y2Photosystem II reaction center protein Ycf12view chain
1 domain
Chain z2Photosystem II reaction center protein Zview chain
1 domain
Chain Z2Photosystem II reaction center protein Zview chain
1 domain

All Domains (80)

#ChainDomain IDRangeFamilyClassification
1a1e4yuua11a1:11-344Photo_RC5037 → 5037.1 → 5037.1.1
2A1e4yuuA11A1:1-344Photo_RC5037 → 5037.1 → 5037.1.1
3a2e4yuua21a2:11-344Photo_RC5037 → 5037.1 → 5037.1.1
4A2e4yuuA21A2:11-344Photo_RC5037 → 5037.1 → 5037.1.1
5b1e4yuub11b1:329-444PSII3744 → 3744.1 → 3744.1.1
6b1e4yuub12b1:2-328,b1:445-504PSII5075 → 5075.1 → 5075.1.1
7B1e4yuuB11B1:2-328,B1:445-484PSII5075 → 5075.1 → 5075.1.1
8B1e4yuuB12B1:329-444PSII3744 → 3744.1 → 3744.1.1
9b2e4yuub21b2:329-444PSII3744 → 3744.1 → 3744.1.1
10b2e4yuub22b2:2-328,b2:445-482PSII5075 → 5075.1 → 5075.1.1
11B2e4yuuB21B2:329-444PSII3744 → 3744.1 → 3744.1.1
12B2e4yuuB22B2:2-328,B2:445-504PSII5075 → 5075.1 → 5075.1.1
13c1e4yuuc11c1:25-473PSII5075 → 5075.1 → 5075.1.1
14C1e4yuuC11C1:25-473PSII5075 → 5075.1 → 5075.1.1
15c2e4yuuc21c2:26-473PSII5075 → 5075.1 → 5075.1.1
16C2e4yuuC21C2:25-473PSII5075 → 5075.1 → 5075.1.1
17d1e4yuud11d1:14-352Photo_RC5037 → 5037.1 → 5037.1.1
18D1e4yuuD11D1:13-352Photo_RC5037 → 5037.1 → 5037.1.1
19d2e4yuud21d2:13-352Photo_RC5037 → 5037.1 → 5037.1.1
20D2e4yuuD21D2:13-352Photo_RC5037 → 5037.1 → 5037.1.1
21e1e4yuue11e1:22-78Cytochrom_B559a5036 → 5036.1 → 5036.1.1
22E1e4yuuE11E1:18-78Cytochrom_B559,Cytochrom_B559a5036 → 5036.1 → 5036.1.1
23e2e4yuue21e2:19-78Cytochrom_B559a5036 → 5036.1 → 5036.1.1
24E2e4yuuE21E2:18-80Cytochrom_B559,Cytochrom_B559a5036 → 5036.1 → 5036.1.1
25f1e4yuuf11f1:17-45Cytochrom_B5595036 → 5036.1 → 5036.1.1
26F1e4yuuF11F1:18-45Cytochrom_B5595036 → 5036.1 → 5036.1.1
27f2e4yuuf21f2:16-44Cytochrom_B5595036 → 5036.1 → 5036.1.1
28F2e4yuuF21F2:15-45Cytochrom_B5595036 → 5036.1 → 5036.1.1
29h1e4yuuh11h1:2-63PsbH5032 → 5032.1 → 5032.1.1
30H1e4yuuH11H1:2-63PsbH5032 → 5032.1 → 5032.1.1
31h2e4yuuh21h2:2-63PsbH5032 → 5032.1 → 5032.1.1
32H2e4yuuH21H2:2-63PsbH5032 → 5032.1 → 5032.1.1
33i1e4yuui11i1:1-34PsbI5035 → 5035.1 → 5035.1.1
34I1e4yuuI11I1:1-34PsbI5035 → 5035.1 → 5035.1.1
35i2e4yuui21i2:1-33PsbI5035 → 5035.1 → 5035.1.1
36I2e4yuuI21I2:1-35PsbI5035 → 5035.1 → 5035.1.1
37j1e4yuuj11j1:9-40PsbJ5031 → 5031.1 → 5031.1.1
38J1e4yuuJ11J1:9-40PsbJ5031 → 5031.1 → 5031.1.1
39j2e4yuuj21j2:8-40PsbJ5031 → 5031.1 → 5031.1.1
40J2e4yuuJ21J2:6-40PsbJ5031 → 5031.1 → 5031.1.1
41k1e4yuuk11k1:10-46PsbK5034 → 5034.1 → 5034.1.1
42K1e4yuuK11K1:10-46PsbK5034 → 5034.1 → 5034.1.1
43k2e4yuuk21k2:10-46PsbK5034 → 5034.1 → 5034.1.1
44K2e4yuuK21K2:10-46PsbK5034 → 5034.1 → 5034.1.1
45l1e4yuul11l1:1-37PsbL5030 → 5030.1 → 5030.1.1
46L1e4yuuL11L1:1-37PsbL5030 → 5030.1 → 5030.1.1
47l2e4yuul21l2:1-37PsbL5030 → 5030.1 → 5030.1.1
48L2e4yuuL21L2:1-37PsbL5030 → 5030.1 → 5030.1.1
49m1e4yuum11m1:1-40PsbM5033 → 5033.1 → 5033.1.1
50M1e4yuuM11M1:1-40PsbM5033 → 5033.1 → 5033.1.1
51m2e4yuum21m2:1-40PsbM5033 → 5033.1 → 5033.1.1
52M2e4yuuM21M2:1-40PsbM5033 → 5033.1 → 5033.1.1
53o1e4yuuo11o1:-2-246MSP5084 → 5084.1 → 5084.1.1
54O1e4yuuO11O1:-2-246MSP5084 → 5084.1 → 5084.1.1
55o2e4yuuo21o2:-2-246MSP5084 → 5084.1 → 5084.1.1
56O2e4yuuO21O2:-2-241MSP5084 → 5084.1 → 5084.1.1
57q1e4yuuq11q1:109-217PsbQ601 → 601.18 → 601.18.1
58Q2e4yuuQ21Q2:103-217PsbQ601 → 601.18 → 601.18.1
59t1e4yuut11t1:1-30PsbT3390 → 3390.1 → 3390.1.1
60T1e4yuuT11T1:1-30PsbT3390 → 3390.1 → 3390.1.1
61t2e4yuut21t2:1-29PsbT3390 → 3390.1 → 3390.1.1
62T2e4yuuT21T2:1-30PsbT3390 → 3390.1 → 3390.1.1
63u1e4yuuu11u1:11-104PsbU102 → 102.1 → 102.1.1
64U1e4yuuU11U1:11-104PsbU102 → 102.1 → 102.1.1
65u2e4yuuu21u2:11-104PsbU102 → 102.1 → 102.1.1
66U2e4yuuU21U2:11-104PsbU102 → 102.1 → 102.1.1
67v1e4yuuv11v1:9-137Cytochrom_C550107 → 107.1 → 107.1.1
68V1e4yuuV11V1:9-137Cytochrom_C550107 → 107.1 → 107.1.1
69v2e4yuuv21v2:9-137Cytochrom_C550107 → 107.1 → 107.1.1
70V2e4yuuV21V2:9-137Cytochrom_C550107 → 107.1 → 107.1.1
71x1e4yuux11x1:3-38PsbX3493 → 3493.1 → 3493.1.1
72X1e4yuuX11X1:5-33PsbX3493 → 3493.1 → 3493.1.1
73x2e4yuux21x2:3-34PsbX3493 → 3493.1 → 3493.1.1
74X2e4yuuX21X2:3-33PsbX3493 → 3493.1 → 3493.1.1
75y1e4yuuy11y1:16-42PSII_Ycf123379 → 3379.1 → 3379.1.1
76Y1e4yuuY11Y1:16-42PSII_Ycf123379 → 3379.1 → 3379.1.1
77y2e4yuuy21y2:16-42PSII_Ycf123379 → 3379.1 → 3379.1.1
78Y2e4yuuY21Y2:16-40PSII_Ycf123379 → 3379.1 → 3379.1.1
79z2e4yuuz21z2:1-59Ycf95044 → 5044.1 → 5044.1.1
80Z2e4yuuZ21Z2:2-60Ycf95044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors